Experiment: growth in full media supplemented with 3 .M CuSO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09410 and SGL_RS18845 are separated by 121 nucleotides SGL_RS18845 and SGL_RS18850 are separated by 152 nucleotides SGL_RS18850 and SGL_RS09420 overlap by 91 nucleotides SGL_RS09420 and SGL_RS09425 overlap by 8 nucleotides SGL_RS09425 and SGL_RS09430 are separated by 30 nucleotides
SGL_RS09410: SGL_RS09410 - IS3 family transposase, at 1,615,869 to 1,616,528
_RS09410
SGL_RS18845: SGL_RS18845 - hypothetical protein, at 1,616,650 to 1,616,751
_RS18845
SGL_RS18850: SGL_RS18850 - IS630 transposase-related protein, at 1,616,904 to 1,617,466
_RS18850
SGL_RS09420: SGL_RS09420 - DUF86 domain-containing protein, at 1,617,376 to 1,617,813
_RS09420
SGL_RS09425: SGL_RS09425 - nucleotidyltransferase family protein, at 1,617,806 to 1,618,096
_RS09425
SGL_RS09430: SGL_RS09430 - leucyl aminopeptidase, at 1,618,127 to 1,619,710
_RS09430
Position (kb)
1617
1618 Strain fitness (log2 ratio)
-1
0
1 at 1617.734 kb on + strand, within SGL_RS09420 at 1617.875 kb on + strand, within SGL_RS09425 at 1617.908 kb on + strand, within SGL_RS09425 at 1617.987 kb on + strand, within SGL_RS09425 at 1617.987 kb on + strand, within SGL_RS09425 at 1618.015 kb on - strand, within SGL_RS09425 at 1618.243 kb on - strand at 1618.297 kb on + strand, within SGL_RS09430 at 1618.430 kb on - strand, within SGL_RS09430 at 1618.448 kb on + strand, within SGL_RS09430 at 1618.455 kb on + strand, within SGL_RS09430 at 1618.479 kb on + strand, within SGL_RS09430 at 1618.519 kb on + strand, within SGL_RS09430 at 1618.561 kb on + strand, within SGL_RS09430 at 1618.561 kb on + strand, within SGL_RS09430 at 1618.569 kb on - strand, within SGL_RS09430 at 1618.720 kb on - strand, within SGL_RS09430
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4 remove 1,617,734 + SGL_RS09420 0.82 -1.3 1,617,875 + SGL_RS09425 0.24 -0.3 1,617,908 + SGL_RS09425 0.35 +0.1 1,617,987 + SGL_RS09425 0.62 +0.3 1,617,987 + SGL_RS09425 0.62 -0.0 1,618,015 - SGL_RS09425 0.72 -0.3 1,618,243 - +1.0 1,618,297 + SGL_RS09430 0.11 +0.5 1,618,430 - SGL_RS09430 0.19 -0.1 1,618,448 + SGL_RS09430 0.20 +0.3 1,618,455 + SGL_RS09430 0.21 +0.4 1,618,479 + SGL_RS09430 0.22 -0.3 1,618,519 + SGL_RS09430 0.25 +0.5 1,618,561 + SGL_RS09430 0.27 +0.5 1,618,561 + SGL_RS09430 0.27 +0.8 1,618,569 - SGL_RS09430 0.28 +0.7 1,618,720 - SGL_RS09430 0.37 +0.1
Or see this region's nucleotide sequence