Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07570

Experiment: growth in full media supplemented with 3 .M CuSO4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07560 and SGL_RS07565 are separated by 9 nucleotidesSGL_RS07565 and SGL_RS19580 are separated by 45 nucleotidesSGL_RS19580 and SGL_RS07570 are separated by 234 nucleotidesSGL_RS07570 and SGL_RS07575 are separated by 130 nucleotides SGL_RS07560: SGL_RS07560 - thylakoid lumen protein, at 1,222,610 to 1,222,927 _RS07560 SGL_RS07565: SGL_RS07565 - hypothetical protein, at 1,222,937 to 1,223,209 _RS07565 SGL_RS19580: SGL_RS19580 - hypothetical protein, at 1,223,255 to 1,223,431 _RS19580 SGL_RS07570: SGL_RS07570 - ABC transporter permease, at 1,223,666 to 1,224,646 _RS07570 SGL_RS07575: SGL_RS07575 - D-alanine--D-alanine ligase family protein, at 1,224,777 to 1,225,841 _RS07575 Position (kb) 1223 1224 1225Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1222.679 kb on - strand, within SGL_RS07560at 1222.774 kb on - strand, within SGL_RS07560at 1222.853 kb on + strand, within SGL_RS07560at 1222.863 kb on - strand, within SGL_RS07560at 1222.885 kb on + strand, within SGL_RS07560at 1222.986 kb on + strand, within SGL_RS07565at 1223.023 kb on - strand, within SGL_RS07565at 1223.040 kb on + strand, within SGL_RS07565at 1223.048 kb on - strand, within SGL_RS07565at 1223.114 kb on + strand, within SGL_RS07565at 1223.122 kb on - strand, within SGL_RS07565at 1223.122 kb on - strand, within SGL_RS07565at 1223.132 kb on + strand, within SGL_RS07565at 1223.158 kb on - strand, within SGL_RS07565at 1223.243 kb on - strandat 1223.344 kb on + strand, within SGL_RS19580at 1223.344 kb on + strand, within SGL_RS19580at 1223.356 kb on - strand, within SGL_RS19580at 1223.534 kb on - strandat 1223.549 kb on + strandat 1223.609 kb on + strandat 1223.943 kb on + strand, within SGL_RS07570at 1224.246 kb on + strand, within SGL_RS07570at 1224.416 kb on - strand, within SGL_RS07570at 1224.429 kb on + strand, within SGL_RS07570at 1224.522 kb on + strand, within SGL_RS07570at 1224.569 kb on + strandat 1224.579 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M CuSO4
remove
1,222,679 - SGL_RS07560 0.22 +1.6
1,222,774 - SGL_RS07560 0.52 -0.7
1,222,853 + SGL_RS07560 0.76 +0.2
1,222,863 - SGL_RS07560 0.80 -0.8
1,222,885 + SGL_RS07560 0.86 -0.5
1,222,986 + SGL_RS07565 0.18 -2.4
1,223,023 - SGL_RS07565 0.32 -2.2
1,223,040 + SGL_RS07565 0.38 -3.7
1,223,048 - SGL_RS07565 0.41 -3.2
1,223,114 + SGL_RS07565 0.65 -2.3
1,223,122 - SGL_RS07565 0.68 -3.9
1,223,122 - SGL_RS07565 0.68 -1.9
1,223,132 + SGL_RS07565 0.71 -2.3
1,223,158 - SGL_RS07565 0.81 -3.5
1,223,243 - -1.6
1,223,344 + SGL_RS19580 0.50 +0.5
1,223,344 + SGL_RS19580 0.50 +0.2
1,223,356 - SGL_RS19580 0.57 +0.1
1,223,534 - -0.8
1,223,549 + +0.1
1,223,609 + +0.1
1,223,943 + SGL_RS07570 0.28 -2.2
1,224,246 + SGL_RS07570 0.59 -2.9
1,224,416 - SGL_RS07570 0.76 -1.9
1,224,429 + SGL_RS07570 0.78 -1.7
1,224,522 + SGL_RS07570 0.87 -1.7
1,224,569 + -2.5
1,224,579 - -2.4

Or see this region's nucleotide sequence