Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13960

Experiment: growth in full media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13955 and SGL_RS13960 are separated by 221 nucleotidesSGL_RS13960 and SGL_RS13965 are separated by 87 nucleotides SGL_RS13955: SGL_RS13955 - RNA methyltransferase, at 2,591,953 to 2,593,107 _RS13955 SGL_RS13960: SGL_RS13960 - class I SAM-dependent methyltransferase, at 2,593,329 to 2,593,967 _RS13960 SGL_RS13965: SGL_RS13965 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 2,594,055 to 2,595,161 _RS13965 Position (kb) 2593 2594Strain fitness (log2 ratio) -1 0 1at 2592.509 kb on - strand, within SGL_RS13955at 2592.921 kb on - strand, within SGL_RS13955at 2592.921 kb on - strand, within SGL_RS13955at 2593.024 kb on + strandat 2593.328 kb on - strandat 2593.342 kb on - strandat 2593.359 kb on + strandat 2593.406 kb on - strand, within SGL_RS13960at 2593.535 kb on + strand, within SGL_RS13960at 2593.583 kb on - strand, within SGL_RS13960at 2593.609 kb on - strand, within SGL_RS13960at 2593.635 kb on + strand, within SGL_RS13960at 2593.695 kb on + strand, within SGL_RS13960at 2593.697 kb on - strand, within SGL_RS13960at 2593.753 kb on + strand, within SGL_RS13960at 2594.042 kb on + strandat 2594.431 kb on + strand, within SGL_RS13965at 2594.945 kb on + strand, within SGL_RS13965

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media
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2,592,509 - SGL_RS13955 0.48 +0.0
2,592,921 - SGL_RS13955 0.84 +0.3
2,592,921 - SGL_RS13955 0.84 -0.1
2,593,024 + -0.2
2,593,328 - -0.2
2,593,342 - +0.1
2,593,359 + -0.2
2,593,406 - SGL_RS13960 0.12 -0.6
2,593,535 + SGL_RS13960 0.32 -0.5
2,593,583 - SGL_RS13960 0.40 -0.5
2,593,609 - SGL_RS13960 0.44 +0.3
2,593,635 + SGL_RS13960 0.48 +0.1
2,593,695 + SGL_RS13960 0.57 +0.0
2,593,697 - SGL_RS13960 0.58 -0.4
2,593,753 + SGL_RS13960 0.66 -0.0
2,594,042 + -0.3
2,594,431 + SGL_RS13965 0.34 -1.0
2,594,945 + SGL_RS13965 0.80 -1.5

Or see this region's nucleotide sequence