Experiment: Inoculated in media lacking a N source and incubated for 1 week, NaNo3 added and recovered for 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08205 and SGL_RS08210 are separated by 337 nucleotides SGL_RS08210 and SGL_RS08215 are separated by 54 nucleotides SGL_RS08215 and SGL_RS08220 are separated by 217 nucleotides
SGL_RS08205: SGL_RS08205 - photosystem II D2 protein (photosystem q(a) protein), at 1,348,840 to 1,349,898
_RS08205
SGL_RS08210: SGL_RS08210 - chromosomal replication initiator protein DnaA, at 1,350,236 to 1,351,579
_RS08210
SGL_RS08215: SGL_RS08215 - YidH family protein, at 1,351,634 to 1,352,038
_RS08215
SGL_RS08220: SGL_RS08220 - phosphoribosylglycinamide formyltransferase 2, at 1,352,256 to 1,353,431
_RS08220
Position (kb)
1350
1351
1352 Strain fitness (log2 ratio)
-1
0
1
2 at 1350.034 kb on - strand at 1350.036 kb on - strand at 1350.069 kb on + strand at 1350.133 kb on - strand at 1350.232 kb on + strand at 1350.280 kb on + strand at 1350.298 kb on - strand at 1350.298 kb on - strand at 1350.344 kb on + strand at 1350.398 kb on + strand, within SGL_RS08210 at 1350.456 kb on - strand, within SGL_RS08210 at 1350.497 kb on - strand, within SGL_RS08210 at 1350.591 kb on + strand, within SGL_RS08210 at 1350.599 kb on - strand, within SGL_RS08210 at 1350.632 kb on + strand, within SGL_RS08210 at 1350.650 kb on - strand, within SGL_RS08210 at 1350.666 kb on + strand, within SGL_RS08210 at 1350.678 kb on + strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.854 kb on + strand, within SGL_RS08210 at 1350.862 kb on - strand, within SGL_RS08210 at 1350.918 kb on + strand, within SGL_RS08210 at 1351.017 kb on + strand, within SGL_RS08210 at 1351.124 kb on + strand, within SGL_RS08210 at 1351.124 kb on + strand, within SGL_RS08210 at 1351.132 kb on - strand, within SGL_RS08210 at 1351.300 kb on - strand, within SGL_RS08210 at 1351.300 kb on - strand, within SGL_RS08210 at 1351.305 kb on - strand, within SGL_RS08210 at 1351.312 kb on - strand, within SGL_RS08210 at 1351.312 kb on - strand, within SGL_RS08210 at 1351.346 kb on - strand, within SGL_RS08210 at 1351.349 kb on - strand, within SGL_RS08210 at 1351.356 kb on - strand, within SGL_RS08210 at 1351.361 kb on + strand, within SGL_RS08210 at 1351.369 kb on - strand, within SGL_RS08210 at 1351.369 kb on - strand, within SGL_RS08210 at 1351.432 kb on - strand, within SGL_RS08210 at 1351.432 kb on - strand, within SGL_RS08210 at 1351.432 kb on - strand, within SGL_RS08210 at 1351.542 kb on + strand at 1351.800 kb on - strand, within SGL_RS08215 at 1351.832 kb on - strand, within SGL_RS08215 at 1351.906 kb on + strand, within SGL_RS08215 at 1351.906 kb on + strand, within SGL_RS08215 at 1351.921 kb on + strand, within SGL_RS08215 at 1351.953 kb on - strand, within SGL_RS08215 at 1352.011 kb on + strand at 1352.040 kb on + strand at 1352.129 kb on - strand at 1352.163 kb on + strand at 1352.185 kb on + strand at 1352.193 kb on - strand at 1352.235 kb on - strand at 1352.258 kb on + strand at 1352.312 kb on - strand at 1352.369 kb on + strand at 1352.372 kb on + strand at 1352.480 kb on - strand, within SGL_RS08220
Per-strain Table
Position Strand Gene LocusTag Fraction Inoculated in media lacking a N source and incubated for 1 week, NaNo3 added and recovered for 3 days remove 1,350,034 - +0.2 1,350,036 - +0.3 1,350,069 + -1.5 1,350,133 - -0.1 1,350,232 + +0.4 1,350,280 + +0.9 1,350,298 - +0.5 1,350,298 - +0.3 1,350,344 + +0.3 1,350,398 + SGL_RS08210 0.12 +1.1 1,350,456 - SGL_RS08210 0.16 +0.3 1,350,497 - SGL_RS08210 0.19 -0.3 1,350,591 + SGL_RS08210 0.26 +0.8 1,350,599 - SGL_RS08210 0.27 +0.4 1,350,632 + SGL_RS08210 0.29 +0.1 1,350,650 - SGL_RS08210 0.31 +0.5 1,350,666 + SGL_RS08210 0.32 +0.3 1,350,678 + SGL_RS08210 0.33 +0.8 1,350,686 - SGL_RS08210 0.33 +0.5 1,350,686 - SGL_RS08210 0.33 -0.2 1,350,686 - SGL_RS08210 0.33 +0.4 1,350,686 - SGL_RS08210 0.33 +0.2 1,350,854 + SGL_RS08210 0.46 +0.2 1,350,862 - SGL_RS08210 0.47 +0.3 1,350,918 + SGL_RS08210 0.51 -0.1 1,351,017 + SGL_RS08210 0.58 +0.4 1,351,124 + SGL_RS08210 0.66 +1.1 1,351,124 + SGL_RS08210 0.66 +0.8 1,351,132 - SGL_RS08210 0.67 +1.7 1,351,300 - SGL_RS08210 0.79 -0.3 1,351,300 - SGL_RS08210 0.79 +0.6 1,351,305 - SGL_RS08210 0.80 +0.7 1,351,312 - SGL_RS08210 0.80 +0.5 1,351,312 - SGL_RS08210 0.80 +1.8 1,351,346 - SGL_RS08210 0.83 +0.5 1,351,349 - SGL_RS08210 0.83 +1.1 1,351,356 - SGL_RS08210 0.83 +0.9 1,351,361 + SGL_RS08210 0.84 +0.8 1,351,369 - SGL_RS08210 0.84 +0.8 1,351,369 - SGL_RS08210 0.84 +0.3 1,351,432 - SGL_RS08210 0.89 +0.2 1,351,432 - SGL_RS08210 0.89 -0.0 1,351,432 - SGL_RS08210 0.89 +0.7 1,351,542 + +0.5 1,351,800 - SGL_RS08215 0.41 +0.3 1,351,832 - SGL_RS08215 0.49 -0.7 1,351,906 + SGL_RS08215 0.67 -0.8 1,351,906 + SGL_RS08215 0.67 +0.1 1,351,921 + SGL_RS08215 0.71 -0.4 1,351,953 - SGL_RS08215 0.79 +0.6 1,352,011 + -0.7 1,352,040 + +0.2 1,352,129 - +0.2 1,352,163 + -0.1 1,352,185 + +0.1 1,352,193 - +0.1 1,352,235 - +0.7 1,352,258 + +0.5 1,352,312 - -0.1 1,352,369 + +0.8 1,352,372 + +0.5 1,352,480 - SGL_RS08220 0.19 +0.9
Or see this region's nucleotide sequence