Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08210

Experiment: Inoculated in media lacking a N source and incubated for 1 week, NaNo3 added and recovered for 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08205 and SGL_RS08210 are separated by 337 nucleotidesSGL_RS08210 and SGL_RS08215 are separated by 54 nucleotidesSGL_RS08215 and SGL_RS08220 are separated by 217 nucleotides SGL_RS08205: SGL_RS08205 - photosystem II D2 protein (photosystem q(a) protein), at 1,348,840 to 1,349,898 _RS08205 SGL_RS08210: SGL_RS08210 - chromosomal replication initiator protein DnaA, at 1,350,236 to 1,351,579 _RS08210 SGL_RS08215: SGL_RS08215 - YidH family protein, at 1,351,634 to 1,352,038 _RS08215 SGL_RS08220: SGL_RS08220 - phosphoribosylglycinamide formyltransferase 2, at 1,352,256 to 1,353,431 _RS08220 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -1 0 1 2at 1350.034 kb on - strandat 1350.036 kb on - strandat 1350.069 kb on + strandat 1350.133 kb on - strandat 1350.232 kb on + strandat 1350.280 kb on + strandat 1350.298 kb on - strandat 1350.298 kb on - strandat 1350.344 kb on + strandat 1350.398 kb on + strand, within SGL_RS08210at 1350.456 kb on - strand, within SGL_RS08210at 1350.497 kb on - strand, within SGL_RS08210at 1350.591 kb on + strand, within SGL_RS08210at 1350.599 kb on - strand, within SGL_RS08210at 1350.632 kb on + strand, within SGL_RS08210at 1350.650 kb on - strand, within SGL_RS08210at 1350.666 kb on + strand, within SGL_RS08210at 1350.678 kb on + strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.854 kb on + strand, within SGL_RS08210at 1350.862 kb on - strand, within SGL_RS08210at 1350.918 kb on + strand, within SGL_RS08210at 1351.017 kb on + strand, within SGL_RS08210at 1351.124 kb on + strand, within SGL_RS08210at 1351.124 kb on + strand, within SGL_RS08210at 1351.132 kb on - strand, within SGL_RS08210at 1351.300 kb on - strand, within SGL_RS08210at 1351.300 kb on - strand, within SGL_RS08210at 1351.305 kb on - strand, within SGL_RS08210at 1351.312 kb on - strand, within SGL_RS08210at 1351.312 kb on - strand, within SGL_RS08210at 1351.346 kb on - strand, within SGL_RS08210at 1351.349 kb on - strand, within SGL_RS08210at 1351.356 kb on - strand, within SGL_RS08210at 1351.361 kb on + strand, within SGL_RS08210at 1351.369 kb on - strand, within SGL_RS08210at 1351.369 kb on - strand, within SGL_RS08210at 1351.432 kb on - strand, within SGL_RS08210at 1351.432 kb on - strand, within SGL_RS08210at 1351.432 kb on - strand, within SGL_RS08210at 1351.542 kb on + strandat 1351.800 kb on - strand, within SGL_RS08215at 1351.832 kb on - strand, within SGL_RS08215at 1351.906 kb on + strand, within SGL_RS08215at 1351.906 kb on + strand, within SGL_RS08215at 1351.921 kb on + strand, within SGL_RS08215at 1351.953 kb on - strand, within SGL_RS08215at 1352.011 kb on + strandat 1352.040 kb on + strandat 1352.129 kb on - strandat 1352.163 kb on + strandat 1352.185 kb on + strandat 1352.193 kb on - strandat 1352.235 kb on - strandat 1352.258 kb on + strandat 1352.312 kb on - strandat 1352.369 kb on + strandat 1352.372 kb on + strandat 1352.480 kb on - strand, within SGL_RS08220

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Per-strain Table

Position Strand Gene LocusTag Fraction Inoculated in media lacking a N source and incubated for 1 week, NaNo3 added and recovered for 3 days
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1,350,034 - +0.2
1,350,036 - +0.3
1,350,069 + -1.5
1,350,133 - -0.1
1,350,232 + +0.4
1,350,280 + +0.9
1,350,298 - +0.5
1,350,298 - +0.3
1,350,344 + +0.3
1,350,398 + SGL_RS08210 0.12 +1.1
1,350,456 - SGL_RS08210 0.16 +0.3
1,350,497 - SGL_RS08210 0.19 -0.3
1,350,591 + SGL_RS08210 0.26 +0.8
1,350,599 - SGL_RS08210 0.27 +0.4
1,350,632 + SGL_RS08210 0.29 +0.1
1,350,650 - SGL_RS08210 0.31 +0.5
1,350,666 + SGL_RS08210 0.32 +0.3
1,350,678 + SGL_RS08210 0.33 +0.8
1,350,686 - SGL_RS08210 0.33 +0.5
1,350,686 - SGL_RS08210 0.33 -0.2
1,350,686 - SGL_RS08210 0.33 +0.4
1,350,686 - SGL_RS08210 0.33 +0.2
1,350,854 + SGL_RS08210 0.46 +0.2
1,350,862 - SGL_RS08210 0.47 +0.3
1,350,918 + SGL_RS08210 0.51 -0.1
1,351,017 + SGL_RS08210 0.58 +0.4
1,351,124 + SGL_RS08210 0.66 +1.1
1,351,124 + SGL_RS08210 0.66 +0.8
1,351,132 - SGL_RS08210 0.67 +1.7
1,351,300 - SGL_RS08210 0.79 -0.3
1,351,300 - SGL_RS08210 0.79 +0.6
1,351,305 - SGL_RS08210 0.80 +0.7
1,351,312 - SGL_RS08210 0.80 +0.5
1,351,312 - SGL_RS08210 0.80 +1.8
1,351,346 - SGL_RS08210 0.83 +0.5
1,351,349 - SGL_RS08210 0.83 +1.1
1,351,356 - SGL_RS08210 0.83 +0.9
1,351,361 + SGL_RS08210 0.84 +0.8
1,351,369 - SGL_RS08210 0.84 +0.8
1,351,369 - SGL_RS08210 0.84 +0.3
1,351,432 - SGL_RS08210 0.89 +0.2
1,351,432 - SGL_RS08210 0.89 -0.0
1,351,432 - SGL_RS08210 0.89 +0.7
1,351,542 + +0.5
1,351,800 - SGL_RS08215 0.41 +0.3
1,351,832 - SGL_RS08215 0.49 -0.7
1,351,906 + SGL_RS08215 0.67 -0.8
1,351,906 + SGL_RS08215 0.67 +0.1
1,351,921 + SGL_RS08215 0.71 -0.4
1,351,953 - SGL_RS08215 0.79 +0.6
1,352,011 + -0.7
1,352,040 + +0.2
1,352,129 - +0.2
1,352,163 + -0.1
1,352,185 + +0.1
1,352,193 - +0.1
1,352,235 - +0.7
1,352,258 + +0.5
1,352,312 - -0.1
1,352,369 + +0.8
1,352,372 + +0.5
1,352,480 - SGL_RS08220 0.19 +0.9

Or see this region's nucleotide sequence