Experiment: Inoculated in media lacking a N source and incubated for 1 week, NaNo3 added and recovered for 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07920 and SGL_RS07925 are separated by 140 nucleotides SGL_RS07925 and SGL_RS07930 are separated by 41 nucleotides SGL_RS07930 and SGL_RS07935 are separated by 16 nucleotides SGL_RS07935 and SGL_RS07940 are separated by 1 nucleotides
SGL_RS07920: SGL_RS07920 - DUF29 domain-containing protein, at 1,292,215 to 1,292,679
_RS07920
SGL_RS07925: SGL_RS07925 - methyltransferase domain-containing protein, at 1,292,820 to 1,293,356
_RS07925
SGL_RS07930: SGL_RS07930 - hypothetical protein, at 1,293,398 to 1,295,551
_RS07930
SGL_RS07935: SGL_RS07935 - hypothetical protein, at 1,295,568 to 1,296,380
_RS07935
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
Position (kb) 1293
1294
1295
1296 Strain fitness (log2 ratio) -1
0
1
2
3 at 1292.892 kb on + strand, within SGL_RS07925 at 1293.061 kb on - strand, within SGL_RS07925 at 1293.061 kb on - strand, within SGL_RS07925 at 1293.268 kb on + strand, within SGL_RS07925 at 1293.821 kb on + strand, within SGL_RS07930 at 1294.629 kb on - strand, within SGL_RS07930 at 1294.739 kb on + strand, within SGL_RS07930 at 1294.900 kb on - strand, within SGL_RS07930 at 1294.917 kb on + strand, within SGL_RS07930 at 1295.068 kb on + strand, within SGL_RS07930 at 1295.074 kb on + strand, within SGL_RS07930 at 1295.201 kb on + strand, within SGL_RS07930 at 1295.247 kb on + strand, within SGL_RS07930 at 1295.287 kb on - strand, within SGL_RS07930 at 1295.620 kb on - strand at 1295.817 kb on + strand, within SGL_RS07935 at 1295.838 kb on + strand, within SGL_RS07935 at 1296.079 kb on - strand, within SGL_RS07935 at 1296.398 kb on - strand at 1296.474 kb on + strand, within SGL_RS07940
Per-strain Table
Position Strand Gene LocusTag Fraction Inoculated in media lacking a N source and incubated for 1 week, NaNo3 added and recovered for 3 days remove 1,292,892 + SGL_RS07925 0.13 -0.5 1,293,061 - SGL_RS07925 0.45 +0.4 1,293,061 - SGL_RS07925 0.45 +0.5 1,293,268 + SGL_RS07925 0.83 +1.0 1,293,821 + SGL_RS07930 0.20 +0.9 1,294,629 - SGL_RS07930 0.57 +3.0 1,294,739 + SGL_RS07930 0.62 +1.0 1,294,900 - SGL_RS07930 0.70 +0.9 1,294,917 + SGL_RS07930 0.71 +2.0 1,295,068 + SGL_RS07930 0.78 +0.0 1,295,074 + SGL_RS07930 0.78 +1.2 1,295,201 + SGL_RS07930 0.84 +1.0 1,295,247 + SGL_RS07930 0.86 +0.9 1,295,287 - SGL_RS07930 0.88 +1.2 1,295,620 - +0.7 1,295,817 + SGL_RS07935 0.31 +0.7 1,295,838 + SGL_RS07935 0.33 +1.1 1,296,079 - SGL_RS07935 0.63 +0.3 1,296,398 - -0.3 1,296,474 + SGL_RS07940 0.18 +1.2
Or see this region's nucleotide sequence