Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17765

Experiment: Arg 10 mM as N source, buffered with TES 20 mM TES pH8 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17760 and SGL_RS17765 are separated by 93 nucleotidesSGL_RS17765 and SGL_RS17775 are separated by 816 nucleotides SGL_RS17760: SGL_RS17760 - circadian clock protein KaiC, at 3,434,876 to 3,436,435 _RS17760 SGL_RS17765: SGL_RS17765 - DUF4114 domain-containing protein, at 3,436,529 to 3,441,844 _RS17765 SGL_RS17775: SGL_RS17775 - hypothetical protein, at 3,442,661 to 3,443,287 _RS17775 Position (kb) 3436 3437 3438 3439 3440 3441 3442Strain fitness (log2 ratio) -2 -1 0 1at 3435.558 kb on + strand, within SGL_RS17760at 3435.641 kb on + strand, within SGL_RS17760at 3435.641 kb on + strand, within SGL_RS17760at 3435.641 kb on + strand, within SGL_RS17760at 3435.649 kb on - strand, within SGL_RS17760at 3435.649 kb on - strand, within SGL_RS17760at 3435.755 kb on + strand, within SGL_RS17760at 3436.027 kb on + strand, within SGL_RS17760at 3436.029 kb on + strand, within SGL_RS17760at 3436.290 kb on + strandat 3436.420 kb on - strandat 3436.420 kb on - strandat 3436.504 kb on - strandat 3436.600 kb on + strandat 3436.606 kb on - strandat 3436.615 kb on + strandat 3436.621 kb on + strandat 3436.629 kb on - strandat 3436.658 kb on + strandat 3436.688 kb on - strandat 3436.699 kb on - strandat 3436.773 kb on + strandat 3436.773 kb on + strandat 3436.781 kb on - strandat 3436.827 kb on - strandat 3436.853 kb on + strandat 3437.144 kb on - strand, within SGL_RS17765at 3437.162 kb on - strand, within SGL_RS17765at 3437.212 kb on + strand, within SGL_RS17765at 3437.212 kb on + strand, within SGL_RS17765at 3437.346 kb on + strand, within SGL_RS17765at 3437.508 kb on + strand, within SGL_RS17765at 3437.589 kb on - strand, within SGL_RS17765at 3437.614 kb on + strand, within SGL_RS17765at 3437.646 kb on - strand, within SGL_RS17765at 3437.648 kb on + strand, within SGL_RS17765at 3437.674 kb on - strand, within SGL_RS17765at 3437.894 kb on + strand, within SGL_RS17765at 3437.902 kb on - strand, within SGL_RS17765at 3438.077 kb on + strand, within SGL_RS17765at 3438.141 kb on + strand, within SGL_RS17765at 3438.213 kb on - strand, within SGL_RS17765at 3438.358 kb on + strand, within SGL_RS17765at 3438.380 kb on + strand, within SGL_RS17765at 3438.449 kb on - strand, within SGL_RS17765at 3438.488 kb on + strand, within SGL_RS17765at 3438.521 kb on + strand, within SGL_RS17765at 3438.550 kb on + strand, within SGL_RS17765at 3438.550 kb on + strand, within SGL_RS17765at 3438.583 kb on + strand, within SGL_RS17765at 3438.591 kb on - strand, within SGL_RS17765at 3438.591 kb on - strand, within SGL_RS17765at 3438.591 kb on - strand, within SGL_RS17765at 3438.695 kb on - strand, within SGL_RS17765at 3438.697 kb on + strand, within SGL_RS17765at 3438.705 kb on - strand, within SGL_RS17765at 3438.835 kb on + strand, within SGL_RS17765at 3438.843 kb on - strand, within SGL_RS17765at 3438.843 kb on - strand, within SGL_RS17765at 3438.925 kb on - strand, within SGL_RS17765at 3438.960 kb on - strand, within SGL_RS17765at 3439.063 kb on - strand, within SGL_RS17765at 3439.201 kb on + strand, within SGL_RS17765at 3439.278 kb on - strand, within SGL_RS17765at 3439.312 kb on - strand, within SGL_RS17765at 3439.322 kb on + strand, within SGL_RS17765at 3439.322 kb on + strand, within SGL_RS17765at 3439.330 kb on - strand, within SGL_RS17765at 3439.371 kb on + strand, within SGL_RS17765at 3439.510 kb on + strand, within SGL_RS17765at 3439.545 kb on + strand, within SGL_RS17765at 3439.553 kb on + strand, within SGL_RS17765at 3439.725 kb on + strand, within SGL_RS17765at 3439.760 kb on - strand, within SGL_RS17765at 3439.836 kb on - strand, within SGL_RS17765at 3439.845 kb on - strand, within SGL_RS17765at 3439.938 kb on - strand, within SGL_RS17765at 3440.003 kb on + strand, within SGL_RS17765at 3440.150 kb on + strand, within SGL_RS17765at 3440.204 kb on + strand, within SGL_RS17765at 3440.217 kb on - strand, within SGL_RS17765at 3440.234 kb on - strand, within SGL_RS17765at 3440.279 kb on + strand, within SGL_RS17765at 3440.350 kb on + strand, within SGL_RS17765at 3440.352 kb on - strand, within SGL_RS17765at 3440.359 kb on - strand, within SGL_RS17765at 3440.447 kb on - strand, within SGL_RS17765at 3440.526 kb on - strand, within SGL_RS17765at 3440.526 kb on - strand, within SGL_RS17765at 3440.576 kb on - strand, within SGL_RS17765at 3440.596 kb on + strand, within SGL_RS17765at 3440.644 kb on + strand, within SGL_RS17765at 3440.644 kb on + strand, within SGL_RS17765at 3440.644 kb on + strand, within SGL_RS17765at 3440.884 kb on + strand, within SGL_RS17765at 3441.082 kb on - strand, within SGL_RS17765at 3441.403 kb on - strandat 3442.563 kb on - strandat 3442.613 kb on - strandat 3442.615 kb on + strandat 3442.834 kb on - strand, within SGL_RS17775

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with TES 20 mM TES pH8 but diluted to prevent light attenuation
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3,435,558 + SGL_RS17760 0.44 -0.9
3,435,641 + SGL_RS17760 0.49 +0.4
3,435,641 + SGL_RS17760 0.49 -1.3
3,435,641 + SGL_RS17760 0.49 -1.7
3,435,649 - SGL_RS17760 0.50 -1.6
3,435,649 - SGL_RS17760 0.50 -1.0
3,435,755 + SGL_RS17760 0.56 -1.4
3,436,027 + SGL_RS17760 0.74 -0.9
3,436,029 + SGL_RS17760 0.74 -2.2
3,436,290 + -1.5
3,436,420 - -1.5
3,436,420 - -1.7
3,436,504 - +0.2
3,436,600 + +0.0
3,436,606 - +0.2
3,436,615 + +0.4
3,436,621 + -0.0
3,436,629 - +0.1
3,436,658 + +0.8
3,436,688 - -0.2
3,436,699 - -0.3
3,436,773 + -0.3
3,436,773 + -0.7
3,436,781 - +0.1
3,436,827 - +0.1
3,436,853 + -0.4
3,437,144 - SGL_RS17765 0.12 +0.1
3,437,162 - SGL_RS17765 0.12 -0.4
3,437,212 + SGL_RS17765 0.13 +0.1
3,437,212 + SGL_RS17765 0.13 -0.3
3,437,346 + SGL_RS17765 0.15 -0.1
3,437,508 + SGL_RS17765 0.18 -0.1
3,437,589 - SGL_RS17765 0.20 -0.5
3,437,614 + SGL_RS17765 0.20 -0.3
3,437,646 - SGL_RS17765 0.21 -0.0
3,437,648 + SGL_RS17765 0.21 -0.3
3,437,674 - SGL_RS17765 0.22 -0.6
3,437,894 + SGL_RS17765 0.26 -0.3
3,437,902 - SGL_RS17765 0.26 -0.2
3,438,077 + SGL_RS17765 0.29 -0.4
3,438,141 + SGL_RS17765 0.30 +0.3
3,438,213 - SGL_RS17765 0.32 +0.2
3,438,358 + SGL_RS17765 0.34 +0.1
3,438,380 + SGL_RS17765 0.35 +0.1
3,438,449 - SGL_RS17765 0.36 +0.2
3,438,488 + SGL_RS17765 0.37 -1.4
3,438,521 + SGL_RS17765 0.37 -0.1
3,438,550 + SGL_RS17765 0.38 -0.1
3,438,550 + SGL_RS17765 0.38 +0.1
3,438,583 + SGL_RS17765 0.39 -0.0
3,438,591 - SGL_RS17765 0.39 -0.6
3,438,591 - SGL_RS17765 0.39 +0.0
3,438,591 - SGL_RS17765 0.39 -0.7
3,438,695 - SGL_RS17765 0.41 -0.1
3,438,697 + SGL_RS17765 0.41 -0.1
3,438,705 - SGL_RS17765 0.41 +0.4
3,438,835 + SGL_RS17765 0.43 +0.6
3,438,843 - SGL_RS17765 0.44 -0.1
3,438,843 - SGL_RS17765 0.44 -0.4
3,438,925 - SGL_RS17765 0.45 -0.1
3,438,960 - SGL_RS17765 0.46 +0.1
3,439,063 - SGL_RS17765 0.48 -0.6
3,439,201 + SGL_RS17765 0.50 -0.3
3,439,278 - SGL_RS17765 0.52 -0.5
3,439,312 - SGL_RS17765 0.52 -0.5
3,439,322 + SGL_RS17765 0.53 -0.4
3,439,322 + SGL_RS17765 0.53 -0.2
3,439,330 - SGL_RS17765 0.53 -0.5
3,439,371 + SGL_RS17765 0.53 -0.4
3,439,510 + SGL_RS17765 0.56 -1.4
3,439,545 + SGL_RS17765 0.57 +0.3
3,439,553 + SGL_RS17765 0.57 +0.5
3,439,725 + SGL_RS17765 0.60 +0.4
3,439,760 - SGL_RS17765 0.61 -0.2
3,439,836 - SGL_RS17765 0.62 +0.3
3,439,845 - SGL_RS17765 0.62 -0.8
3,439,938 - SGL_RS17765 0.64 +0.2
3,440,003 + SGL_RS17765 0.65 -0.5
3,440,150 + SGL_RS17765 0.68 +0.2
3,440,204 + SGL_RS17765 0.69 +0.2
3,440,217 - SGL_RS17765 0.69 +0.3
3,440,234 - SGL_RS17765 0.70 -0.3
3,440,279 + SGL_RS17765 0.71 -0.4
3,440,350 + SGL_RS17765 0.72 -0.3
3,440,352 - SGL_RS17765 0.72 -0.2
3,440,359 - SGL_RS17765 0.72 +0.2
3,440,447 - SGL_RS17765 0.74 +0.2
3,440,526 - SGL_RS17765 0.75 +0.2
3,440,526 - SGL_RS17765 0.75 -0.1
3,440,576 - SGL_RS17765 0.76 -0.0
3,440,596 + SGL_RS17765 0.77 -2.6
3,440,644 + SGL_RS17765 0.77 -0.3
3,440,644 + SGL_RS17765 0.77 +0.1
3,440,644 + SGL_RS17765 0.77 -0.1
3,440,884 + SGL_RS17765 0.82 -0.1
3,441,082 - SGL_RS17765 0.86 -0.6
3,441,403 - -0.2
3,442,563 - -0.8
3,442,613 - -0.1
3,442,615 + -0.0
3,442,834 - SGL_RS17775 0.28 -0.2

Or see this region's nucleotide sequence