Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09760

Experiment: Arg 10 mM as N source, buffered with TES 20 mM TES pH8 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09755 and SGL_RS09760 are separated by 76 nucleotidesSGL_RS09760 and SGL_RS19200 are separated by 794 nucleotides SGL_RS09755: SGL_RS09755 - bidirectional NAD-reducing hydrogenase diaphorase subunit HoxF, at 1,676,366 to 1,677,967 _RS09755 SGL_RS09760: SGL_RS09760 - bidirectional hydrogenase complex protein HoxE, at 1,678,044 to 1,678,565 _RS09760 SGL_RS19200: SGL_RS19200 - IS5 family transposase, at 1,679,360 to 1,679,938 _RS19200 Position (kb) 1678 1679Strain fitness (log2 ratio) -1 0 1at 1677.274 kb on + strand, within SGL_RS09755at 1677.289 kb on - strand, within SGL_RS09755at 1677.290 kb on + strand, within SGL_RS09755at 1677.313 kb on - strand, within SGL_RS09755at 1677.329 kb on - strand, within SGL_RS09755at 1677.369 kb on + strand, within SGL_RS09755at 1677.411 kb on + strand, within SGL_RS09755at 1677.452 kb on - strand, within SGL_RS09755at 1677.466 kb on - strand, within SGL_RS09755at 1677.501 kb on - strand, within SGL_RS09755at 1677.537 kb on - strand, within SGL_RS09755at 1677.605 kb on + strand, within SGL_RS09755at 1677.652 kb on - strand, within SGL_RS09755at 1677.715 kb on - strand, within SGL_RS09755at 1677.715 kb on - strand, within SGL_RS09755at 1678.065 kb on - strandat 1678.109 kb on - strand, within SGL_RS09760at 1678.116 kb on + strand, within SGL_RS09760at 1678.148 kb on + strand, within SGL_RS09760at 1678.209 kb on + strand, within SGL_RS09760at 1678.231 kb on - strand, within SGL_RS09760at 1678.376 kb on + strand, within SGL_RS09760at 1678.376 kb on + strand, within SGL_RS09760at 1678.384 kb on - strand, within SGL_RS09760at 1678.389 kb on - strand, within SGL_RS09760at 1678.455 kb on - strand, within SGL_RS09760at 1678.538 kb on + strandat 1678.625 kb on - strandat 1678.663 kb on - strandat 1679.090 kb on + strandat 1679.099 kb on + strandat 1679.369 kb on + strandat 1679.497 kb on - strand, within SGL_RS19200at 1679.497 kb on - strand, within SGL_RS19200

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with TES 20 mM TES pH8 but diluted to prevent light attenuation
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1,677,274 + SGL_RS09755 0.57 -0.6
1,677,289 - SGL_RS09755 0.58 -0.2
1,677,290 + SGL_RS09755 0.58 +0.1
1,677,313 - SGL_RS09755 0.59 +0.2
1,677,329 - SGL_RS09755 0.60 -0.5
1,677,369 + SGL_RS09755 0.63 -0.2
1,677,411 + SGL_RS09755 0.65 +0.5
1,677,452 - SGL_RS09755 0.68 +0.3
1,677,466 - SGL_RS09755 0.69 +0.2
1,677,501 - SGL_RS09755 0.71 -0.3
1,677,537 - SGL_RS09755 0.73 -0.2
1,677,605 + SGL_RS09755 0.77 +0.4
1,677,652 - SGL_RS09755 0.80 -0.9
1,677,715 - SGL_RS09755 0.84 -0.0
1,677,715 - SGL_RS09755 0.84 +0.4
1,678,065 - -0.5
1,678,109 - SGL_RS09760 0.12 -0.0
1,678,116 + SGL_RS09760 0.14 -0.6
1,678,148 + SGL_RS09760 0.20 +1.1
1,678,209 + SGL_RS09760 0.32 -0.9
1,678,231 - SGL_RS09760 0.36 -0.3
1,678,376 + SGL_RS09760 0.64 -0.2
1,678,376 + SGL_RS09760 0.64 -0.1
1,678,384 - SGL_RS09760 0.65 -0.0
1,678,389 - SGL_RS09760 0.66 -0.2
1,678,455 - SGL_RS09760 0.79 -0.4
1,678,538 + +0.1
1,678,625 - +0.9
1,678,663 - -0.2
1,679,090 + +1.1
1,679,099 + +1.1
1,679,369 + -0.1
1,679,497 - SGL_RS19200 0.24 +0.1
1,679,497 - SGL_RS19200 0.24 -0.4

Or see this region's nucleotide sequence