Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17085

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17075 and SGL_RS17080 are separated by 117 nucleotidesSGL_RS17080 and SGL_RS17085 are separated by 240 nucleotidesSGL_RS17085 and SGL_RS17090 are separated by 170 nucleotides SGL_RS17075: SGL_RS17075 - recombination mediator RecR, at 3,283,467 to 3,284,165 _RS17075 SGL_RS17080: SGL_RS17080 - hypothetical protein, at 3,284,283 to 3,284,810 _RS17080 SGL_RS17085: SGL_RS17085 - TIGR00300 family protein, at 3,285,051 to 3,287,168 _RS17085 SGL_RS17090: SGL_RS17090 - GTPase family protein, at 3,287,339 to 3,289,264 _RS17090 Position (kb) 3285 3286 3287 3288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3284.376 kb on - strand, within SGL_RS17080at 3284.464 kb on + strand, within SGL_RS17080at 3284.896 kb on - strandat 3284.941 kb on + strandat 3285.023 kb on + strandat 3285.069 kb on + strandat 3285.077 kb on - strandat 3285.077 kb on - strandat 3285.077 kb on - strandat 3285.242 kb on + strandat 3285.518 kb on - strand, within SGL_RS17085at 3285.524 kb on - strand, within SGL_RS17085at 3285.572 kb on - strand, within SGL_RS17085at 3285.653 kb on - strand, within SGL_RS17085at 3285.653 kb on - strand, within SGL_RS17085at 3285.653 kb on - strand, within SGL_RS17085at 3285.656 kb on + strand, within SGL_RS17085at 3285.666 kb on + strand, within SGL_RS17085at 3285.965 kb on + strand, within SGL_RS17085at 3285.980 kb on - strand, within SGL_RS17085at 3285.996 kb on - strand, within SGL_RS17085at 3286.166 kb on + strand, within SGL_RS17085at 3286.239 kb on + strand, within SGL_RS17085at 3286.370 kb on + strand, within SGL_RS17085at 3286.378 kb on - strand, within SGL_RS17085at 3286.382 kb on + strand, within SGL_RS17085at 3286.438 kb on - strand, within SGL_RS17085at 3286.554 kb on - strand, within SGL_RS17085at 3286.610 kb on + strand, within SGL_RS17085at 3286.812 kb on - strand, within SGL_RS17085at 3286.812 kb on - strand, within SGL_RS17085at 3286.939 kb on + strand, within SGL_RS17085at 3287.059 kb on - strandat 3287.132 kb on - strandat 3287.236 kb on - strandat 3287.246 kb on - strandat 3287.420 kb on + strandat 3287.489 kb on + strandat 3287.543 kb on - strand, within SGL_RS17090at 3287.551 kb on - strand, within SGL_RS17090at 3287.767 kb on + strand, within SGL_RS17090at 3287.803 kb on - strand, within SGL_RS17090at 3287.803 kb on - strand, within SGL_RS17090at 3287.842 kb on + strand, within SGL_RS17090at 3287.853 kb on + strand, within SGL_RS17090at 3287.941 kb on + strand, within SGL_RS17090at 3288.013 kb on + strand, within SGL_RS17090at 3288.060 kb on + strand, within SGL_RS17090at 3288.103 kb on - strand, within SGL_RS17090

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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3,284,376 - SGL_RS17080 0.18 +0.1
3,284,464 + SGL_RS17080 0.34 -0.6
3,284,896 - -0.5
3,284,941 + +0.8
3,285,023 + +0.0
3,285,069 + -0.8
3,285,077 - -0.9
3,285,077 - -1.4
3,285,077 - -2.1
3,285,242 + -2.7
3,285,518 - SGL_RS17085 0.22 -2.9
3,285,524 - SGL_RS17085 0.22 -1.2
3,285,572 - SGL_RS17085 0.25 -3.2
3,285,653 - SGL_RS17085 0.28 -3.0
3,285,653 - SGL_RS17085 0.28 -3.8
3,285,653 - SGL_RS17085 0.28 -3.7
3,285,656 + SGL_RS17085 0.29 -2.9
3,285,666 + SGL_RS17085 0.29 -3.4
3,285,965 + SGL_RS17085 0.43 -3.5
3,285,980 - SGL_RS17085 0.44 -2.7
3,285,996 - SGL_RS17085 0.45 -1.5
3,286,166 + SGL_RS17085 0.53 -3.2
3,286,239 + SGL_RS17085 0.56 -3.7
3,286,370 + SGL_RS17085 0.62 -1.9
3,286,378 - SGL_RS17085 0.63 -1.7
3,286,382 + SGL_RS17085 0.63 -3.3
3,286,438 - SGL_RS17085 0.65 -2.8
3,286,554 - SGL_RS17085 0.71 -3.6
3,286,610 + SGL_RS17085 0.74 -2.6
3,286,812 - SGL_RS17085 0.83 -2.9
3,286,812 - SGL_RS17085 0.83 -4.5
3,286,939 + SGL_RS17085 0.89 -4.3
3,287,059 - -2.4
3,287,132 - -2.6
3,287,236 - -1.0
3,287,246 - -1.7
3,287,420 + -0.1
3,287,489 + -0.1
3,287,543 - SGL_RS17090 0.11 -0.2
3,287,551 - SGL_RS17090 0.11 -0.6
3,287,767 + SGL_RS17090 0.22 -0.4
3,287,803 - SGL_RS17090 0.24 -0.1
3,287,803 - SGL_RS17090 0.24 -0.6
3,287,842 + SGL_RS17090 0.26 +0.2
3,287,853 + SGL_RS17090 0.27 +0.1
3,287,941 + SGL_RS17090 0.31 -0.6
3,288,013 + SGL_RS17090 0.35 +0.1
3,288,060 + SGL_RS17090 0.37 +0.2
3,288,103 - SGL_RS17090 0.40 -0.3

Or see this region's nucleotide sequence