Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17075 and SGL_RS17080 are separated by 117 nucleotides SGL_RS17080 and SGL_RS17085 are separated by 240 nucleotides SGL_RS17085 and SGL_RS17090 are separated by 170 nucleotides
SGL_RS17075: SGL_RS17075 - recombination mediator RecR, at 3,283,467 to 3,284,165
_RS17075
SGL_RS17080: SGL_RS17080 - hypothetical protein, at 3,284,283 to 3,284,810
_RS17080
SGL_RS17085: SGL_RS17085 - TIGR00300 family protein, at 3,285,051 to 3,287,168
_RS17085
SGL_RS17090: SGL_RS17090 - GTPase family protein, at 3,287,339 to 3,289,264
_RS17090
Position (kb)
3285
3286
3287
3288 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3284.376 kb on - strand, within SGL_RS17080 at 3284.464 kb on + strand, within SGL_RS17080 at 3284.896 kb on - strand at 3284.941 kb on + strand at 3285.023 kb on + strand at 3285.069 kb on + strand at 3285.077 kb on - strand at 3285.077 kb on - strand at 3285.077 kb on - strand at 3285.242 kb on + strand at 3285.518 kb on - strand, within SGL_RS17085 at 3285.524 kb on - strand, within SGL_RS17085 at 3285.572 kb on - strand, within SGL_RS17085 at 3285.653 kb on - strand, within SGL_RS17085 at 3285.653 kb on - strand, within SGL_RS17085 at 3285.653 kb on - strand, within SGL_RS17085 at 3285.656 kb on + strand, within SGL_RS17085 at 3285.666 kb on + strand, within SGL_RS17085 at 3285.965 kb on + strand, within SGL_RS17085 at 3285.980 kb on - strand, within SGL_RS17085 at 3285.996 kb on - strand, within SGL_RS17085 at 3286.166 kb on + strand, within SGL_RS17085 at 3286.239 kb on + strand, within SGL_RS17085 at 3286.370 kb on + strand, within SGL_RS17085 at 3286.378 kb on - strand, within SGL_RS17085 at 3286.382 kb on + strand, within SGL_RS17085 at 3286.438 kb on - strand, within SGL_RS17085 at 3286.554 kb on - strand, within SGL_RS17085 at 3286.610 kb on + strand, within SGL_RS17085 at 3286.812 kb on - strand, within SGL_RS17085 at 3286.812 kb on - strand, within SGL_RS17085 at 3286.939 kb on + strand, within SGL_RS17085 at 3287.059 kb on - strand at 3287.132 kb on - strand at 3287.236 kb on - strand at 3287.246 kb on - strand at 3287.420 kb on + strand at 3287.489 kb on + strand at 3287.543 kb on - strand, within SGL_RS17090 at 3287.551 kb on - strand, within SGL_RS17090 at 3287.767 kb on + strand, within SGL_RS17090 at 3287.803 kb on - strand, within SGL_RS17090 at 3287.803 kb on - strand, within SGL_RS17090 at 3287.842 kb on + strand, within SGL_RS17090 at 3287.853 kb on + strand, within SGL_RS17090 at 3287.941 kb on + strand, within SGL_RS17090 at 3288.013 kb on + strand, within SGL_RS17090 at 3288.060 kb on + strand, within SGL_RS17090 at 3288.103 kb on - strand, within SGL_RS17090
Per-strain Table
Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8 remove 3,284,376 - SGL_RS17080 0.18 +0.1 3,284,464 + SGL_RS17080 0.34 -0.6 3,284,896 - -0.5 3,284,941 + +0.8 3,285,023 + +0.0 3,285,069 + -0.8 3,285,077 - -0.9 3,285,077 - -1.4 3,285,077 - -2.1 3,285,242 + -2.7 3,285,518 - SGL_RS17085 0.22 -2.9 3,285,524 - SGL_RS17085 0.22 -1.2 3,285,572 - SGL_RS17085 0.25 -3.2 3,285,653 - SGL_RS17085 0.28 -3.0 3,285,653 - SGL_RS17085 0.28 -3.8 3,285,653 - SGL_RS17085 0.28 -3.7 3,285,656 + SGL_RS17085 0.29 -2.9 3,285,666 + SGL_RS17085 0.29 -3.4 3,285,965 + SGL_RS17085 0.43 -3.5 3,285,980 - SGL_RS17085 0.44 -2.7 3,285,996 - SGL_RS17085 0.45 -1.5 3,286,166 + SGL_RS17085 0.53 -3.2 3,286,239 + SGL_RS17085 0.56 -3.7 3,286,370 + SGL_RS17085 0.62 -1.9 3,286,378 - SGL_RS17085 0.63 -1.7 3,286,382 + SGL_RS17085 0.63 -3.3 3,286,438 - SGL_RS17085 0.65 -2.8 3,286,554 - SGL_RS17085 0.71 -3.6 3,286,610 + SGL_RS17085 0.74 -2.6 3,286,812 - SGL_RS17085 0.83 -2.9 3,286,812 - SGL_RS17085 0.83 -4.5 3,286,939 + SGL_RS17085 0.89 -4.3 3,287,059 - -2.4 3,287,132 - -2.6 3,287,236 - -1.0 3,287,246 - -1.7 3,287,420 + -0.1 3,287,489 + -0.1 3,287,543 - SGL_RS17090 0.11 -0.2 3,287,551 - SGL_RS17090 0.11 -0.6 3,287,767 + SGL_RS17090 0.22 -0.4 3,287,803 - SGL_RS17090 0.24 -0.1 3,287,803 - SGL_RS17090 0.24 -0.6 3,287,842 + SGL_RS17090 0.26 +0.2 3,287,853 + SGL_RS17090 0.27 +0.1 3,287,941 + SGL_RS17090 0.31 -0.6 3,288,013 + SGL_RS17090 0.35 +0.1 3,288,060 + SGL_RS17090 0.37 +0.2 3,288,103 - SGL_RS17090 0.40 -0.3
Or see this region's nucleotide sequence