Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14620

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14610 and SGL_RS14620 are separated by 306 nucleotidesSGL_RS14620 and SGL_RS14625 are separated by 43 nucleotidesSGL_RS14625 and SGL_RS14630 are separated by 198 nucleotides SGL_RS14610: SGL_RS14610 - RNA polymerase sigma factor SigC, at 2,731,560 to 2,732,774 _RS14610 SGL_RS14620: SGL_RS14620 - CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein, at 2,733,081 to 2,733,986 _RS14620 SGL_RS14625: SGL_RS14625 - YggT family protein, at 2,734,030 to 2,734,323 _RS14625 SGL_RS14630: SGL_RS14630 - pentapeptide repeat-containing protein, at 2,734,522 to 2,735,301 _RS14630 Position (kb) 2733 2734Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2732.134 kb on + strand, within SGL_RS14610at 2732.142 kb on - strand, within SGL_RS14610at 2732.161 kb on + strand, within SGL_RS14610at 2732.219 kb on - strand, within SGL_RS14610at 2732.478 kb on + strand, within SGL_RS14610at 2732.865 kb on + strandat 2733.058 kb on + strandat 2733.141 kb on + strandat 2733.167 kb on + strandat 2733.470 kb on + strand, within SGL_RS14620at 2733.537 kb on + strand, within SGL_RS14620at 2733.649 kb on + strand, within SGL_RS14620at 2733.650 kb on - strand, within SGL_RS14620at 2733.694 kb on + strand, within SGL_RS14620at 2733.795 kb on + strand, within SGL_RS14620at 2733.796 kb on - strand, within SGL_RS14620at 2733.855 kb on + strand, within SGL_RS14620at 2733.855 kb on + strand, within SGL_RS14620at 2733.870 kb on + strand, within SGL_RS14620at 2733.878 kb on - strand, within SGL_RS14620at 2733.890 kb on + strand, within SGL_RS14620at 2733.978 kb on - strandat 2734.062 kb on - strand, within SGL_RS14625at 2734.218 kb on + strand, within SGL_RS14625at 2734.297 kb on - strandat 2734.447 kb on + strandat 2734.449 kb on + strandat 2734.449 kb on + strandat 2734.457 kb on - strandat 2734.526 kb on + strandat 2734.803 kb on - strand, within SGL_RS14630at 2734.808 kb on - strand, within SGL_RS14630at 2734.822 kb on + strand, within SGL_RS14630at 2734.864 kb on + strand, within SGL_RS14630at 2734.889 kb on - strand, within SGL_RS14630at 2734.910 kb on + strand, within SGL_RS14630

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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2,732,134 + SGL_RS14610 0.47 +0.2
2,732,142 - SGL_RS14610 0.48 -0.2
2,732,161 + SGL_RS14610 0.49 -0.2
2,732,219 - SGL_RS14610 0.54 -0.2
2,732,478 + SGL_RS14610 0.76 -0.0
2,732,865 + -0.3
2,733,058 + -2.5
2,733,141 + -2.1
2,733,167 + -2.8
2,733,470 + SGL_RS14620 0.43 -4.2
2,733,537 + SGL_RS14620 0.50 -3.8
2,733,649 + SGL_RS14620 0.63 -1.5
2,733,650 - SGL_RS14620 0.63 -3.4
2,733,694 + SGL_RS14620 0.68 -1.5
2,733,795 + SGL_RS14620 0.79 -2.0
2,733,796 - SGL_RS14620 0.79 -1.8
2,733,855 + SGL_RS14620 0.85 -2.7
2,733,855 + SGL_RS14620 0.85 -2.2
2,733,870 + SGL_RS14620 0.87 -2.7
2,733,878 - SGL_RS14620 0.88 -2.7
2,733,890 + SGL_RS14620 0.89 -2.3
2,733,978 - +0.2
2,734,062 - SGL_RS14625 0.11 +0.5
2,734,218 + SGL_RS14625 0.64 +0.9
2,734,297 - +0.5
2,734,447 + +0.4
2,734,449 + -0.2
2,734,449 + +1.2
2,734,457 - +0.1
2,734,526 + -0.3
2,734,803 - SGL_RS14630 0.36 +0.9
2,734,808 - SGL_RS14630 0.37 +0.1
2,734,822 + SGL_RS14630 0.38 +0.8
2,734,864 + SGL_RS14630 0.44 +0.5
2,734,889 - SGL_RS14630 0.47 +0.4
2,734,910 + SGL_RS14630 0.50 +0.9

Or see this region's nucleotide sequence