Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12985

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12975 and SGL_RS12985 are separated by 255 nucleotidesSGL_RS12985 and SGL_RS19465 are separated by 15 nucleotidesSGL_RS19465 and SGL_RS12990 are separated by 30 nucleotidesSGL_RS12990 and SGL_RS12995 overlap by 1 nucleotides SGL_RS12975: SGL_RS12975 - glycosyltransferase family 1 protein, at 2,385,939 to 2,387,168 _RS12975 SGL_RS12985: SGL_RS12985 - decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase, at 2,387,424 to 2,388,851 _RS12985 SGL_RS19465: SGL_RS19465 - hypothetical protein, at 2,388,867 to 2,389,031 _RS19465 SGL_RS12990: SGL_RS12990 - hypothetical protein, at 2,389,062 to 2,389,481 _RS12990 SGL_RS12995: SGL_RS12995 - hypothetical protein, at 2,389,481 to 2,389,900 _RS12995 Position (kb) 2387 2388 2389Strain fitness (log2 ratio) -2 -1 0 1at 2387.263 kb on - strandat 2387.272 kb on - strandat 2387.462 kb on + strandat 2387.462 kb on + strandat 2387.474 kb on + strandat 2387.869 kb on + strand, within SGL_RS12985at 2387.903 kb on + strand, within SGL_RS12985at 2387.919 kb on - strand, within SGL_RS12985at 2387.969 kb on + strand, within SGL_RS12985at 2388.431 kb on + strand, within SGL_RS12985at 2388.524 kb on - strand, within SGL_RS12985at 2388.759 kb on - strandat 2388.875 kb on - strandat 2389.091 kb on - strandat 2389.124 kb on + strand, within SGL_RS12990at 2389.425 kb on + strand, within SGL_RS12990at 2389.565 kb on + strand, within SGL_RS12995at 2389.586 kb on + strand, within SGL_RS12995at 2389.609 kb on + strand, within SGL_RS12995at 2389.715 kb on - strand, within SGL_RS12995

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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2,387,263 - +0.1
2,387,272 - -0.3
2,387,462 + -2.7
2,387,462 + +0.0
2,387,474 + -0.3
2,387,869 + SGL_RS12985 0.31 -1.7
2,387,903 + SGL_RS12985 0.34 -2.0
2,387,919 - SGL_RS12985 0.35 +1.3
2,387,969 + SGL_RS12985 0.38 -0.3
2,388,431 + SGL_RS12985 0.71 -0.7
2,388,524 - SGL_RS12985 0.77 -0.8
2,388,759 - -0.3
2,388,875 - -0.1
2,389,091 - +0.1
2,389,124 + SGL_RS12990 0.15 +0.1
2,389,425 + SGL_RS12990 0.86 +0.7
2,389,565 + SGL_RS12995 0.20 +0.2
2,389,586 + SGL_RS12995 0.25 +0.6
2,389,609 + SGL_RS12995 0.30 +0.1
2,389,715 - SGL_RS12995 0.56 -0.5

Or see this region's nucleotide sequence