Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12685

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12680 and SGL_RS12685 are separated by 10 nucleotidesSGL_RS12685 and SGL_RS12690 overlap by 2 nucleotidesSGL_RS12690 and SGL_RS12695 are separated by 227 nucleotides SGL_RS12680: SGL_RS12680 - DUF4114 domain-containing protein, at 2,300,515 to 2,302,446 _RS12680 SGL_RS12685: SGL_RS12685 - hypothetical protein, at 2,302,457 to 2,302,639 _RS12685 SGL_RS12690: SGL_RS12690 - hypothetical protein, at 2,302,638 to 2,303,279 _RS12690 SGL_RS12695: SGL_RS12695 - tetratricopeptide repeat protein, at 2,303,507 to 2,304,034 _RS12695 Position (kb) 2302 2303Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2301.461 kb on + strand, within SGL_RS12680at 2301.511 kb on - strand, within SGL_RS12680at 2301.523 kb on - strand, within SGL_RS12680at 2301.523 kb on - strand, within SGL_RS12680at 2301.689 kb on + strand, within SGL_RS12680at 2301.689 kb on + strand, within SGL_RS12680at 2301.689 kb on + strand, within SGL_RS12680at 2301.707 kb on - strand, within SGL_RS12680at 2301.835 kb on - strand, within SGL_RS12680at 2301.891 kb on - strand, within SGL_RS12680at 2302.132 kb on + strand, within SGL_RS12680at 2302.132 kb on - strand, within SGL_RS12680at 2302.326 kb on - strandat 2302.438 kb on - strandat 2302.502 kb on - strand, within SGL_RS12685at 2302.518 kb on + strand, within SGL_RS12685at 2302.627 kb on - strandat 2302.642 kb on + strandat 2302.678 kb on - strandat 2302.703 kb on - strand, within SGL_RS12690at 2303.029 kb on + strand, within SGL_RS12690at 2303.037 kb on - strand, within SGL_RS12690at 2303.353 kb on + strandat 2303.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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2,301,461 + SGL_RS12680 0.49 -0.3
2,301,511 - SGL_RS12680 0.52 +0.3
2,301,523 - SGL_RS12680 0.52 +0.7
2,301,523 - SGL_RS12680 0.52 -0.1
2,301,689 + SGL_RS12680 0.61 -0.6
2,301,689 + SGL_RS12680 0.61 +0.1
2,301,689 + SGL_RS12680 0.61 +0.1
2,301,707 - SGL_RS12680 0.62 -0.3
2,301,835 - SGL_RS12680 0.68 +0.2
2,301,891 - SGL_RS12680 0.71 -0.0
2,302,132 + SGL_RS12680 0.84 -0.0
2,302,132 - SGL_RS12680 0.84 -0.6
2,302,326 - -0.3
2,302,438 - +0.1
2,302,502 - SGL_RS12685 0.25 -3.1
2,302,518 + SGL_RS12685 0.33 -1.2
2,302,627 - -0.0
2,302,642 + -2.8
2,302,678 - -1.8
2,302,703 - SGL_RS12690 0.10 -2.3
2,303,029 + SGL_RS12690 0.61 -1.7
2,303,037 - SGL_RS12690 0.62 -3.8
2,303,353 + -0.5
2,303,526 + -0.1

Or see this region's nucleotide sequence