Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11655

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11645 and SGL_RS11650 overlap by 4 nucleotidesSGL_RS11650 and SGL_RS11655 are separated by 33 nucleotidesSGL_RS11655 and SGL_RS11660 are separated by 273 nucleotides SGL_RS11645: SGL_RS11645 - photosystem II protein Psb27, at 2,070,975 to 2,071,382 _RS11645 SGL_RS11650: SGL_RS11650 - ribonuclease III, at 2,071,379 to 2,072,074 _RS11650 SGL_RS11655: SGL_RS11655 - iron export ABC transporter permease subunit FetB, at 2,072,108 to 2,072,887 _RS11655 SGL_RS11660: SGL_RS11660 - carotenoid oxygenase family protein, at 2,073,161 to 2,074,603 _RS11660 Position (kb) 2072 2073Strain fitness (log2 ratio) -1 0 1at 2071.123 kb on - strand, within SGL_RS11645at 2071.169 kb on - strand, within SGL_RS11645at 2071.483 kb on - strand, within SGL_RS11650at 2071.523 kb on - strand, within SGL_RS11650at 2071.568 kb on + strand, within SGL_RS11650at 2071.739 kb on + strand, within SGL_RS11650at 2071.751 kb on + strand, within SGL_RS11650at 2071.805 kb on - strand, within SGL_RS11650at 2071.883 kb on + strand, within SGL_RS11650at 2071.998 kb on + strand, within SGL_RS11650at 2072.044 kb on - strandat 2072.044 kb on - strandat 2072.080 kb on + strandat 2072.468 kb on + strand, within SGL_RS11655at 2072.652 kb on - strand, within SGL_RS11655at 2072.766 kb on - strand, within SGL_RS11655at 2072.965 kb on - strandat 2073.574 kb on + strand, within SGL_RS11660at 2073.574 kb on + strand, within SGL_RS11660at 2073.601 kb on + strand, within SGL_RS11660at 2073.819 kb on + strand, within SGL_RS11660

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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2,071,123 - SGL_RS11645 0.36 +0.9
2,071,169 - SGL_RS11645 0.48 +0.3
2,071,483 - SGL_RS11650 0.15 +0.1
2,071,523 - SGL_RS11650 0.21 +0.3
2,071,568 + SGL_RS11650 0.27 +0.2
2,071,739 + SGL_RS11650 0.52 +0.5
2,071,751 + SGL_RS11650 0.53 -0.6
2,071,805 - SGL_RS11650 0.61 -0.1
2,071,883 + SGL_RS11650 0.72 -0.1
2,071,998 + SGL_RS11650 0.89 -0.2
2,072,044 - -1.1
2,072,044 - -0.7
2,072,080 + -1.2
2,072,468 + SGL_RS11655 0.46 -1.4
2,072,652 - SGL_RS11655 0.70 -1.7
2,072,766 - SGL_RS11655 0.84 -0.6
2,072,965 - -0.3
2,073,574 + SGL_RS11660 0.29 -0.1
2,073,574 + SGL_RS11660 0.29 +0.0
2,073,601 + SGL_RS11660 0.30 -0.6
2,073,819 + SGL_RS11660 0.46 -0.1

Or see this region's nucleotide sequence