Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09865

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09860 and SGL_RS09865 are separated by 213 nucleotidesSGL_RS09865 and SGL_RS09870 are separated by 79 nucleotidesSGL_RS09870 and SGL_RS09875 are separated by 71 nucleotides SGL_RS09860: SGL_RS09860 - carotenoid biosynthesis protein, at 1,695,886 to 1,696,797 _RS09860 SGL_RS09865: SGL_RS09865 - cytochrome c oxidase subunit II, at 1,697,011 to 1,697,913 _RS09865 SGL_RS09870: SGL_RS09870 - pantothenate kinase, at 1,697,993 to 1,698,766 _RS09870 SGL_RS09875: SGL_RS09875 - glycosyltransferase, at 1,698,838 to 1,699,980 _RS09875 Position (kb) 1697 1698Strain fitness (log2 ratio) -1 0 1at 1696.044 kb on + strand, within SGL_RS09860at 1696.178 kb on + strand, within SGL_RS09860at 1696.178 kb on + strand, within SGL_RS09860at 1696.529 kb on + strand, within SGL_RS09860at 1696.713 kb on - strandat 1696.723 kb on - strandat 1696.901 kb on + strandat 1696.915 kb on + strandat 1697.058 kb on - strandat 1697.073 kb on + strandat 1697.208 kb on + strand, within SGL_RS09865at 1697.223 kb on - strand, within SGL_RS09865at 1697.272 kb on + strand, within SGL_RS09865at 1697.284 kb on + strand, within SGL_RS09865at 1697.344 kb on + strand, within SGL_RS09865at 1697.556 kb on - strand, within SGL_RS09865at 1697.583 kb on + strand, within SGL_RS09865at 1697.818 kb on + strand, within SGL_RS09865at 1697.832 kb on - strandat 1697.865 kb on - strandat 1698.023 kb on + strandat 1698.048 kb on - strandat 1698.766 kb on + strandat 1698.775 kb on - strandat 1698.823 kb on - strandat 1698.877 kb on + strandat 1698.885 kb on - strandat 1698.885 kb on - strandat 1698.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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1,696,044 + SGL_RS09860 0.17 -1.1
1,696,178 + SGL_RS09860 0.32 -0.0
1,696,178 + SGL_RS09860 0.32 -0.1
1,696,529 + SGL_RS09860 0.71 +0.9
1,696,713 - +0.0
1,696,723 - -0.1
1,696,901 + +0.6
1,696,915 + +0.1
1,697,058 - +0.3
1,697,073 + -0.7
1,697,208 + SGL_RS09865 0.22 -0.1
1,697,223 - SGL_RS09865 0.23 -0.7
1,697,272 + SGL_RS09865 0.29 -0.8
1,697,284 + SGL_RS09865 0.30 -0.5
1,697,344 + SGL_RS09865 0.37 -0.1
1,697,556 - SGL_RS09865 0.60 -0.4
1,697,583 + SGL_RS09865 0.63 +0.0
1,697,818 + SGL_RS09865 0.89 -0.2
1,697,832 - -0.1
1,697,865 - -0.1
1,698,023 + -0.4
1,698,048 - +0.8
1,698,766 + +0.6
1,698,775 - -0.2
1,698,823 - +0.2
1,698,877 + +0.1
1,698,885 - +0.2
1,698,885 - +0.4
1,698,897 + +0.2

Or see this region's nucleotide sequence