Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09150

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09140 and SGL_RS09145 are separated by 218 nucleotidesSGL_RS09145 and SGL_RS09150 are separated by 36 nucleotidesSGL_RS09150 and SGL_RS09155 are separated by 308 nucleotidesSGL_RS09155 and SGL_RS09160 are separated by 441 nucleotides SGL_RS09140: SGL_RS09140 - IS701 family transposase, at 1,554,855 to 1,555,645 _RS09140 SGL_RS09145: SGL_RS09145 - Uma2 family endonuclease, at 1,555,864 to 1,556,438 _RS09145 SGL_RS09150: SGL_RS09150 - acetolactate synthase large subunit, at 1,556,475 to 1,558,118 _RS09150 SGL_RS09155: SGL_RS09155 - riboflavin synthase subunit alpha, at 1,558,427 to 1,558,627 _RS09155 SGL_RS09160: SGL_RS09160 - thioredoxin family protein, at 1,559,069 to 1,559,611 _RS09160 Position (kb) 1556 1557 1558 1559Strain fitness (log2 ratio) -2 -1 0 1at 1555.895 kb on + strandat 1555.924 kb on - strand, within SGL_RS09145at 1555.967 kb on - strand, within SGL_RS09145at 1556.016 kb on + strand, within SGL_RS09145at 1556.045 kb on + strand, within SGL_RS09145at 1556.164 kb on + strand, within SGL_RS09145at 1556.300 kb on - strand, within SGL_RS09145at 1556.326 kb on - strand, within SGL_RS09145at 1556.458 kb on - strandat 1556.550 kb on + strandat 1556.562 kb on + strandat 1556.577 kb on - strandat 1556.857 kb on - strand, within SGL_RS09150at 1556.895 kb on + strand, within SGL_RS09150at 1557.400 kb on + strand, within SGL_RS09150at 1557.407 kb on - strand, within SGL_RS09150at 1557.414 kb on + strand, within SGL_RS09150at 1557.807 kb on + strand, within SGL_RS09150at 1558.222 kb on + strandat 1558.266 kb on + strandat 1558.274 kb on - strandat 1558.669 kb on + strandat 1558.937 kb on - strandat 1559.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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1,555,895 + +0.3
1,555,924 - SGL_RS09145 0.10 +0.4
1,555,967 - SGL_RS09145 0.18 -0.8
1,556,016 + SGL_RS09145 0.26 -1.1
1,556,045 + SGL_RS09145 0.31 +0.1
1,556,164 + SGL_RS09145 0.52 +1.1
1,556,300 - SGL_RS09145 0.76 -0.5
1,556,326 - SGL_RS09145 0.80 -0.4
1,556,458 - -0.1
1,556,550 + -2.3
1,556,562 + -1.9
1,556,577 - -1.9
1,556,857 - SGL_RS09150 0.23 -0.9
1,556,895 + SGL_RS09150 0.26 -1.8
1,557,400 + SGL_RS09150 0.56 -1.8
1,557,407 - SGL_RS09150 0.57 -2.5
1,557,414 + SGL_RS09150 0.57 -1.5
1,557,807 + SGL_RS09150 0.81 -1.9
1,558,222 + -0.1
1,558,266 + -0.1
1,558,274 - -0.2
1,558,669 + +0.2
1,558,937 - -0.3
1,559,104 + -0.0

Or see this region's nucleotide sequence