Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08710

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08700 and SGL_RS08705 are separated by 198 nucleotidesSGL_RS08705 and SGL_RS08710 are separated by 248 nucleotidesSGL_RS08710 and SGL_RS08715 are separated by 34 nucleotides SGL_RS08700: SGL_RS08700 - cation-transporting P-type ATPase, at 1,457,213 to 1,459,930 _RS08700 SGL_RS08705: SGL_RS08705 - hypothetical protein, at 1,460,129 to 1,460,566 _RS08705 SGL_RS08710: SGL_RS08710 - folylpolyglutamate synthase/dihydrofolate synthase family protein, at 1,460,815 to 1,462,101 _RS08710 SGL_RS08715: SGL_RS08715 - fatty acid desaturase, at 1,462,136 to 1,463,245 _RS08715 Position (kb) 1460 1461 1462 1463Strain fitness (log2 ratio) -2 -1 0 1 2at 1460.536 kb on + strandat 1460.550 kb on + strandat 1460.550 kb on + strandat 1460.784 kb on + strandat 1461.066 kb on - strand, within SGL_RS08710at 1461.092 kb on + strand, within SGL_RS08710at 1461.130 kb on + strand, within SGL_RS08710at 1461.231 kb on + strand, within SGL_RS08710at 1461.351 kb on - strand, within SGL_RS08710at 1461.393 kb on + strand, within SGL_RS08710at 1461.421 kb on - strand, within SGL_RS08710at 1461.541 kb on + strand, within SGL_RS08710at 1461.549 kb on - strand, within SGL_RS08710at 1461.598 kb on - strand, within SGL_RS08710at 1461.717 kb on - strand, within SGL_RS08710at 1461.942 kb on + strand, within SGL_RS08710at 1461.954 kb on - strand, within SGL_RS08710at 1462.021 kb on + strandat 1462.067 kb on + strandat 1462.210 kb on - strandat 1462.319 kb on - strand, within SGL_RS08715at 1462.320 kb on - strand, within SGL_RS08715at 1462.733 kb on + strand, within SGL_RS08715at 1462.753 kb on - strand, within SGL_RS08715at 1462.993 kb on + strand, within SGL_RS08715at 1463.091 kb on + strand, within SGL_RS08715

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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1,460,536 + +1.8
1,460,550 + -0.1
1,460,550 + -0.8
1,460,784 + +0.1
1,461,066 - SGL_RS08710 0.20 -0.0
1,461,092 + SGL_RS08710 0.22 -0.3
1,461,130 + SGL_RS08710 0.24 -0.7
1,461,231 + SGL_RS08710 0.32 -1.3
1,461,351 - SGL_RS08710 0.42 -0.3
1,461,393 + SGL_RS08710 0.45 +0.3
1,461,421 - SGL_RS08710 0.47 -0.7
1,461,541 + SGL_RS08710 0.56 -1.3
1,461,549 - SGL_RS08710 0.57 -2.3
1,461,598 - SGL_RS08710 0.61 -1.0
1,461,717 - SGL_RS08710 0.70 -0.3
1,461,942 + SGL_RS08710 0.88 +0.3
1,461,954 - SGL_RS08710 0.89 +0.3
1,462,021 + -1.7
1,462,067 + +1.0
1,462,210 - -1.7
1,462,319 - SGL_RS08715 0.16 -0.7
1,462,320 - SGL_RS08715 0.17 +0.2
1,462,733 + SGL_RS08715 0.54 -0.6
1,462,753 - SGL_RS08715 0.56 -0.4
1,462,993 + SGL_RS08715 0.77 -1.2
1,463,091 + SGL_RS08715 0.86 -0.2

Or see this region's nucleotide sequence