Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08650

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08640 and SGL_RS18805 are separated by 32 nucleotidesSGL_RS18805 and SGL_RS08650 are separated by 38 nucleotidesSGL_RS08650 and SGL_RS08655 are separated by 257 nucleotides SGL_RS08640: SGL_RS08640 - NAD(P)/FAD-dependent oxidoreductase, at 1,444,115 to 1,445,392 _RS08640 SGL_RS18805: SGL_RS18805 - type II toxin-antitoxin system HicA family toxin, at 1,445,425 to 1,445,835 _RS18805 SGL_RS08650: SGL_RS08650 - S-layer homology domain-containing protein, at 1,445,874 to 1,446,839 _RS08650 SGL_RS08655: SGL_RS08655 - cyanophycinase, at 1,447,097 to 1,447,912 _RS08655 Position (kb) 1445 1446 1447Strain fitness (log2 ratio) -3 -2 -1 0 1at 1444.901 kb on - strand, within SGL_RS08640at 1444.943 kb on + strand, within SGL_RS08640at 1444.946 kb on - strand, within SGL_RS08640at 1444.951 kb on - strand, within SGL_RS08640at 1444.951 kb on - strand, within SGL_RS08640at 1445.305 kb on - strandat 1445.381 kb on + strandat 1445.395 kb on - strandat 1445.582 kb on + strand, within SGL_RS18805at 1445.612 kb on + strand, within SGL_RS18805at 1446.303 kb on + strand, within SGL_RS08650at 1446.347 kb on - strand, within SGL_RS08650at 1446.347 kb on - strand, within SGL_RS08650at 1446.397 kb on + strand, within SGL_RS08650at 1446.699 kb on - strand, within SGL_RS08650at 1446.712 kb on - strand, within SGL_RS08650at 1446.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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1,444,901 - SGL_RS08640 0.62 -0.6
1,444,943 + SGL_RS08640 0.65 -0.9
1,444,946 - SGL_RS08640 0.65 -0.1
1,444,951 - SGL_RS08640 0.65 -3.1
1,444,951 - SGL_RS08640 0.65 -1.4
1,445,305 - -0.9
1,445,381 + +0.7
1,445,395 - +0.3
1,445,582 + SGL_RS18805 0.38 -0.5
1,445,612 + SGL_RS18805 0.45 -0.4
1,446,303 + SGL_RS08650 0.44 -1.8
1,446,347 - SGL_RS08650 0.49 -2.5
1,446,347 - SGL_RS08650 0.49 -1.3
1,446,397 + SGL_RS08650 0.54 -1.9
1,446,699 - SGL_RS08650 0.85 -1.3
1,446,712 - SGL_RS08650 0.87 -1.1
1,446,795 - -1.1

Or see this region's nucleotide sequence