Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08520

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08515 and SGL_RS08520 are separated by 192 nucleotidesSGL_RS08520 and SGL_RS08525 are separated by 371 nucleotides SGL_RS08515: SGL_RS08515 - histidinol-phosphate transaminase, at 1,410,995 to 1,412,044 _RS08515 SGL_RS08520: SGL_RS08520 - metalloregulator ArsR/SmtB family transcription factor, at 1,412,237 to 1,412,551 _RS08520 SGL_RS08525: SGL_RS08525 - aquaporin Z, at 1,412,923 to 1,413,666 _RS08525 Position (kb) 1412 1413Strain fitness (log2 ratio) -3 -2 -1 0 1at 1412.453 kb on + strand, within SGL_RS08520at 1412.455 kb on + strand, within SGL_RS08520at 1412.473 kb on + strand, within SGL_RS08520at 1412.528 kb on - strandat 1412.621 kb on + strandat 1412.629 kb on - strandat 1412.630 kb on + strandat 1412.683 kb on - strandat 1412.684 kb on - strandat 1412.727 kb on - strandat 1412.727 kb on - strandat 1412.731 kb on + strandat 1412.732 kb on + strandat 1412.863 kb on + strandat 1413.093 kb on + strand, within SGL_RS08525at 1413.103 kb on - strand, within SGL_RS08525at 1413.151 kb on - strand, within SGL_RS08525at 1413.200 kb on - strand, within SGL_RS08525at 1413.216 kb on - strand, within SGL_RS08525at 1413.454 kb on - strand, within SGL_RS08525at 1413.515 kb on + strand, within SGL_RS08525at 1413.515 kb on + strand, within SGL_RS08525at 1413.523 kb on - strand, within SGL_RS08525

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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1,412,453 + SGL_RS08520 0.69 -1.3
1,412,455 + SGL_RS08520 0.69 -1.2
1,412,473 + SGL_RS08520 0.75 -3.0
1,412,528 - -1.1
1,412,621 + +0.7
1,412,629 - +0.2
1,412,630 + +0.4
1,412,683 - -0.0
1,412,684 - -0.3
1,412,727 - +0.1
1,412,727 - -0.2
1,412,731 + +0.1
1,412,732 + +0.2
1,412,863 + -1.0
1,413,093 + SGL_RS08525 0.23 +0.2
1,413,103 - SGL_RS08525 0.24 -0.3
1,413,151 - SGL_RS08525 0.31 +0.1
1,413,200 - SGL_RS08525 0.37 +0.7
1,413,216 - SGL_RS08525 0.39 +0.3
1,413,454 - SGL_RS08525 0.71 -0.2
1,413,515 + SGL_RS08525 0.80 -0.0
1,413,515 + SGL_RS08525 0.80 +0.0
1,413,523 - SGL_RS08525 0.81 -0.2

Or see this region's nucleotide sequence