Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17640

Experiment: growth in full media and 10 mM glucose= photomixotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17635 and SGL_RS17640 overlap by 4 nucleotidesSGL_RS17640 and SGL_RS17645 are separated by 2 nucleotides SGL_RS17635: SGL_RS17635 - ABC transporter ATP-binding protein, at 3,410,761 to 3,411,852 _RS17635 SGL_RS17640: SGL_RS17640 - family 10 glycosylhydrolase, at 3,411,849 to 3,413,075 _RS17640 SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667 _RS17645 Position (kb) 3411 3412 3413 3414Strain fitness (log2 ratio) -1 0 1at 3410.980 kb on + strand, within SGL_RS17635at 3411.008 kb on + strand, within SGL_RS17635at 3411.118 kb on - strand, within SGL_RS17635at 3411.187 kb on + strand, within SGL_RS17635at 3411.207 kb on - strand, within SGL_RS17635at 3411.295 kb on + strand, within SGL_RS17635at 3411.295 kb on + strand, within SGL_RS17635at 3411.339 kb on - strand, within SGL_RS17635at 3411.408 kb on - strand, within SGL_RS17635at 3411.410 kb on - strand, within SGL_RS17635at 3411.536 kb on + strand, within SGL_RS17635at 3411.560 kb on + strand, within SGL_RS17635at 3411.766 kb on - strandat 3412.188 kb on - strand, within SGL_RS17640at 3412.463 kb on - strand, within SGL_RS17640at 3412.653 kb on - strand, within SGL_RS17640at 3412.817 kb on - strand, within SGL_RS17640at 3412.913 kb on + strand, within SGL_RS17640at 3412.967 kb on - strandat 3413.054 kb on + strandat 3413.239 kb on + strand, within SGL_RS17645at 3413.242 kb on - strand, within SGL_RS17645at 3413.284 kb on - strand, within SGL_RS17645at 3413.414 kb on - strand, within SGL_RS17645at 3413.444 kb on + strand, within SGL_RS17645at 3413.448 kb on + strand, within SGL_RS17645at 3413.518 kb on + strand, within SGL_RS17645at 3413.538 kb on + strand, within SGL_RS17645at 3413.676 kb on - strand, within SGL_RS17645at 3413.709 kb on - strand, within SGL_RS17645at 3413.916 kb on + strand, within SGL_RS17645at 3414.052 kb on - strand, within SGL_RS17645at 3414.075 kb on + strand, within SGL_RS17645

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth
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3,410,980 + SGL_RS17635 0.20 -1.3
3,411,008 + SGL_RS17635 0.23 +0.1
3,411,118 - SGL_RS17635 0.33 +1.2
3,411,187 + SGL_RS17635 0.39 -0.8
3,411,207 - SGL_RS17635 0.41 -1.1
3,411,295 + SGL_RS17635 0.49 -0.7
3,411,295 + SGL_RS17635 0.49 -0.6
3,411,339 - SGL_RS17635 0.53 -0.7
3,411,408 - SGL_RS17635 0.59 +0.6
3,411,410 - SGL_RS17635 0.59 -1.2
3,411,536 + SGL_RS17635 0.71 +0.9
3,411,560 + SGL_RS17635 0.73 +0.1
3,411,766 - -1.0
3,412,188 - SGL_RS17640 0.28 +0.5
3,412,463 - SGL_RS17640 0.50 +0.2
3,412,653 - SGL_RS17640 0.66 +0.0
3,412,817 - SGL_RS17640 0.79 +0.1
3,412,913 + SGL_RS17640 0.87 -0.4
3,412,967 - +1.3
3,413,054 + +0.1
3,413,239 + SGL_RS17645 0.10 +0.6
3,413,242 - SGL_RS17645 0.10 +1.0
3,413,284 - SGL_RS17645 0.13 -0.3
3,413,414 - SGL_RS17645 0.21 -0.8
3,413,444 + SGL_RS17645 0.23 -1.3
3,413,448 + SGL_RS17645 0.23 -0.3
3,413,518 + SGL_RS17645 0.28 -0.3
3,413,538 + SGL_RS17645 0.29 -0.3
3,413,676 - SGL_RS17645 0.38 -0.3
3,413,709 - SGL_RS17645 0.40 -0.2
3,413,916 + SGL_RS17645 0.53 -0.0
3,414,052 - SGL_RS17645 0.61 -0.1
3,414,075 + SGL_RS17645 0.63 +1.2

Or see this region's nucleotide sequence