Experiment: growth in full media and 10 mM glucose= photomixotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16080 and SGL_RS16085 are separated by 81 nucleotides SGL_RS16085 and SGL_RS16090 are separated by 129 nucleotides SGL_RS16090 and SGL_RS16095 are separated by 11 nucleotides
SGL_RS16080: SGL_RS16080 - precorrin-8X methylmutase, at 3,057,217 to 3,058,329
_RS16080
SGL_RS16085: SGL_RS16085 - heavy metal translocating P-type ATPase, at 3,058,411 to 3,060,339
_RS16085
SGL_RS16090: SGL_RS16090 - YnfA family protein, at 3,060,469 to 3,060,795
_RS16090
SGL_RS16095: SGL_RS16095 - Zn(II)-sensing metalloregulatory transcriptional repressor ZiaR, at 3,060,807 to 3,061,205
_RS16095
Position (kb)
3058
3059
3060
3061 Strain fitness (log2 ratio)
-2
-1
0
1 at 3057.423 kb on + strand, within SGL_RS16080 at 3057.451 kb on + strand, within SGL_RS16080 at 3057.456 kb on + strand, within SGL_RS16080 at 3057.465 kb on + strand, within SGL_RS16080 at 3057.465 kb on + strand, within SGL_RS16080 at 3057.532 kb on - strand, within SGL_RS16080 at 3057.549 kb on - strand, within SGL_RS16080 at 3057.554 kb on + strand, within SGL_RS16080 at 3057.561 kb on + strand, within SGL_RS16080 at 3057.561 kb on + strand, within SGL_RS16080 at 3057.564 kb on - strand, within SGL_RS16080 at 3057.564 kb on - strand, within SGL_RS16080 at 3057.612 kb on - strand, within SGL_RS16080 at 3057.708 kb on - strand, within SGL_RS16080 at 3057.744 kb on + strand, within SGL_RS16080 at 3057.749 kb on + strand, within SGL_RS16080 at 3057.754 kb on + strand, within SGL_RS16080 at 3057.767 kb on - strand, within SGL_RS16080 at 3057.862 kb on - strand, within SGL_RS16080 at 3057.897 kb on + strand, within SGL_RS16080 at 3057.897 kb on + strand, within SGL_RS16080 at 3057.905 kb on - strand, within SGL_RS16080 at 3057.906 kb on - strand, within SGL_RS16080 at 3057.993 kb on - strand, within SGL_RS16080 at 3058.010 kb on + strand, within SGL_RS16080 at 3058.086 kb on - strand, within SGL_RS16080 at 3058.100 kb on - strand, within SGL_RS16080 at 3058.190 kb on + strand, within SGL_RS16080 at 3058.190 kb on + strand, within SGL_RS16080 at 3058.198 kb on - strand, within SGL_RS16080 at 3058.216 kb on + strand, within SGL_RS16080 at 3058.231 kb on + strand at 3058.277 kb on + strand at 3058.283 kb on - strand at 3058.332 kb on - strand at 3058.414 kb on + strand at 3058.433 kb on - strand at 3058.525 kb on - strand at 3058.546 kb on - strand at 3058.682 kb on + strand, within SGL_RS16085 at 3058.711 kb on - strand, within SGL_RS16085 at 3058.711 kb on - strand, within SGL_RS16085 at 3058.777 kb on + strand, within SGL_RS16085 at 3058.950 kb on + strand, within SGL_RS16085 at 3058.958 kb on - strand, within SGL_RS16085 at 3058.986 kb on + strand, within SGL_RS16085 at 3058.986 kb on + strand, within SGL_RS16085 at 3058.994 kb on - strand, within SGL_RS16085 at 3058.994 kb on - strand, within SGL_RS16085 at 3058.994 kb on - strand, within SGL_RS16085 at 3059.035 kb on + strand, within SGL_RS16085 at 3059.043 kb on - strand, within SGL_RS16085 at 3059.056 kb on - strand, within SGL_RS16085 at 3059.058 kb on + strand, within SGL_RS16085 at 3059.058 kb on + strand, within SGL_RS16085 at 3059.067 kb on + strand, within SGL_RS16085 at 3059.213 kb on + strand, within SGL_RS16085 at 3059.251 kb on - strand, within SGL_RS16085 at 3059.361 kb on - strand, within SGL_RS16085 at 3059.497 kb on + strand, within SGL_RS16085 at 3059.577 kb on + strand, within SGL_RS16085 at 3059.628 kb on - strand, within SGL_RS16085 at 3059.671 kb on + strand, within SGL_RS16085 at 3059.680 kb on + strand, within SGL_RS16085 at 3059.685 kb on + strand, within SGL_RS16085 at 3059.685 kb on + strand, within SGL_RS16085 at 3059.693 kb on - strand, within SGL_RS16085 at 3059.693 kb on - strand, within SGL_RS16085 at 3059.719 kb on + strand, within SGL_RS16085 at 3059.741 kb on - strand, within SGL_RS16085 at 3059.802 kb on + strand, within SGL_RS16085 at 3059.908 kb on - strand, within SGL_RS16085 at 3059.930 kb on - strand, within SGL_RS16085 at 3059.945 kb on - strand, within SGL_RS16085 at 3060.016 kb on + strand, within SGL_RS16085 at 3060.043 kb on + strand, within SGL_RS16085 at 3060.091 kb on + strand, within SGL_RS16085 at 3060.151 kb on - strand at 3060.264 kb on + strand at 3060.309 kb on + strand at 3060.475 kb on - strand at 3060.475 kb on - strand at 3060.506 kb on + strand, within SGL_RS16090 at 3060.519 kb on - strand, within SGL_RS16090 at 3060.519 kb on - strand, within SGL_RS16090 at 3060.522 kb on + strand, within SGL_RS16090 at 3060.530 kb on - strand, within SGL_RS16090 at 3060.530 kb on - strand, within SGL_RS16090 at 3060.530 kb on - strand, within SGL_RS16090 at 3060.575 kb on + strand, within SGL_RS16090 at 3060.699 kb on + strand, within SGL_RS16090 at 3060.708 kb on - strand, within SGL_RS16090 at 3060.884 kb on - strand, within SGL_RS16095 at 3060.892 kb on - strand, within SGL_RS16095 at 3060.941 kb on + strand, within SGL_RS16095 at 3061.014 kb on + strand, within SGL_RS16095 at 3061.035 kb on + strand, within SGL_RS16095 at 3061.076 kb on + strand, within SGL_RS16095 at 3061.092 kb on + strand, within SGL_RS16095 at 3061.111 kb on + strand, within SGL_RS16095 at 3061.128 kb on - strand, within SGL_RS16095 at 3061.180 kb on + strand at 3061.209 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth remove 3,057,423 + SGL_RS16080 0.19 -0.3 3,057,451 + SGL_RS16080 0.21 -0.0 3,057,456 + SGL_RS16080 0.21 +1.2 3,057,465 + SGL_RS16080 0.22 +0.9 3,057,465 + SGL_RS16080 0.22 -0.4 3,057,532 - SGL_RS16080 0.28 +0.5 3,057,549 - SGL_RS16080 0.30 +0.0 3,057,554 + SGL_RS16080 0.30 +0.3 3,057,561 + SGL_RS16080 0.31 -0.0 3,057,561 + SGL_RS16080 0.31 +0.1 3,057,564 - SGL_RS16080 0.31 -0.3 3,057,564 - SGL_RS16080 0.31 -0.5 3,057,612 - SGL_RS16080 0.35 -1.3 3,057,708 - SGL_RS16080 0.44 -2.1 3,057,744 + SGL_RS16080 0.47 -2.2 3,057,749 + SGL_RS16080 0.48 -0.7 3,057,754 + SGL_RS16080 0.48 -1.0 3,057,767 - SGL_RS16080 0.49 -0.1 3,057,862 - SGL_RS16080 0.58 -0.2 3,057,897 + SGL_RS16080 0.61 +0.1 3,057,897 + SGL_RS16080 0.61 -0.9 3,057,905 - SGL_RS16080 0.62 -0.2 3,057,906 - SGL_RS16080 0.62 +0.3 3,057,993 - SGL_RS16080 0.70 +0.2 3,058,010 + SGL_RS16080 0.71 +0.2 3,058,086 - SGL_RS16080 0.78 -1.7 3,058,100 - SGL_RS16080 0.79 -0.6 3,058,190 + SGL_RS16080 0.87 -2.1 3,058,190 + SGL_RS16080 0.87 -0.2 3,058,198 - SGL_RS16080 0.88 -0.2 3,058,216 + SGL_RS16080 0.90 +0.3 3,058,231 + -0.6 3,058,277 + -0.2 3,058,283 - -0.1 3,058,332 - -0.1 3,058,414 + +0.5 3,058,433 - -0.3 3,058,525 - -0.7 3,058,546 - +0.7 3,058,682 + SGL_RS16085 0.14 -1.3 3,058,711 - SGL_RS16085 0.16 -1.3 3,058,711 - SGL_RS16085 0.16 -0.4 3,058,777 + SGL_RS16085 0.19 -0.3 3,058,950 + SGL_RS16085 0.28 -1.2 3,058,958 - SGL_RS16085 0.28 +0.2 3,058,986 + SGL_RS16085 0.30 -1.4 3,058,986 + SGL_RS16085 0.30 -0.8 3,058,994 - SGL_RS16085 0.30 -1.2 3,058,994 - SGL_RS16085 0.30 +0.3 3,058,994 - SGL_RS16085 0.30 -0.8 3,059,035 + SGL_RS16085 0.32 -0.4 3,059,043 - SGL_RS16085 0.33 -1.4 3,059,056 - SGL_RS16085 0.33 +0.0 3,059,058 + SGL_RS16085 0.34 +1.0 3,059,058 + SGL_RS16085 0.34 +0.6 3,059,067 + SGL_RS16085 0.34 -0.5 3,059,213 + SGL_RS16085 0.42 -0.6 3,059,251 - SGL_RS16085 0.44 +0.7 3,059,361 - SGL_RS16085 0.49 -0.1 3,059,497 + SGL_RS16085 0.56 -0.8 3,059,577 + SGL_RS16085 0.60 +0.1 3,059,628 - SGL_RS16085 0.63 +0.1 3,059,671 + SGL_RS16085 0.65 +1.3 3,059,680 + SGL_RS16085 0.66 +1.2 3,059,685 + SGL_RS16085 0.66 +1.1 3,059,685 + SGL_RS16085 0.66 +0.6 3,059,693 - SGL_RS16085 0.66 -0.3 3,059,693 - SGL_RS16085 0.66 +0.6 3,059,719 + SGL_RS16085 0.68 +0.3 3,059,741 - SGL_RS16085 0.69 +0.2 3,059,802 + SGL_RS16085 0.72 -0.8 3,059,908 - SGL_RS16085 0.78 +0.4 3,059,930 - SGL_RS16085 0.79 +0.5 3,059,945 - SGL_RS16085 0.80 +0.7 3,060,016 + SGL_RS16085 0.83 +0.9 3,060,043 + SGL_RS16085 0.85 +1.4 3,060,091 + SGL_RS16085 0.87 -0.9 3,060,151 - -2.4 3,060,264 + -1.0 3,060,309 + -0.2 3,060,475 - -0.6 3,060,475 - -0.6 3,060,506 + SGL_RS16090 0.11 -0.5 3,060,519 - SGL_RS16090 0.15 -0.1 3,060,519 - SGL_RS16090 0.15 +0.1 3,060,522 + SGL_RS16090 0.16 +0.2 3,060,530 - SGL_RS16090 0.19 -1.6 3,060,530 - SGL_RS16090 0.19 +0.1 3,060,530 - SGL_RS16090 0.19 +1.1 3,060,575 + SGL_RS16090 0.32 -0.2 3,060,699 + SGL_RS16090 0.70 -0.2 3,060,708 - SGL_RS16090 0.73 -0.3 3,060,884 - SGL_RS16095 0.19 +0.5 3,060,892 - SGL_RS16095 0.21 -0.7 3,060,941 + SGL_RS16095 0.34 -1.4 3,061,014 + SGL_RS16095 0.52 -0.5 3,061,035 + SGL_RS16095 0.57 -2.2 3,061,076 + SGL_RS16095 0.67 -1.0 3,061,092 + SGL_RS16095 0.71 -1.1 3,061,111 + SGL_RS16095 0.76 -0.6 3,061,128 - SGL_RS16095 0.80 -0.0 3,061,180 + -0.0 3,061,209 + -0.8
Or see this region's nucleotide sequence