Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15420

Experiment: growth in full media and 10 mM glucose= photomixotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15415 and SGL_RS15420 are separated by 226 nucleotidesSGL_RS15420 and SGL_RS15425 are separated by 130 nucleotides SGL_RS15415: SGL_RS15415 - response regulator, at 2,909,975 to 2,910,895 _RS15415 SGL_RS15420: SGL_RS15420 - DevA family ABC transporter ATP-binding protein, at 2,911,122 to 2,911,859 _RS15420 SGL_RS15425: SGL_RS15425 - cobalamin biosynthesis protein CobW, at 2,911,990 to 2,913,048 _RS15425 Position (kb) 2911 2912Strain fitness (log2 ratio) -2 -1 0 1at 2910.217 kb on - strand, within SGL_RS15415at 2910.365 kb on + strand, within SGL_RS15415at 2910.606 kb on + strand, within SGL_RS15415at 2910.870 kb on - strandat 2910.889 kb on + strandat 2910.889 kb on + strandat 2910.904 kb on + strandat 2910.904 kb on - strandat 2910.929 kb on - strandat 2910.929 kb on - strandat 2910.941 kb on - strandat 2910.950 kb on - strandat 2911.146 kb on - strandat 2911.504 kb on + strand, within SGL_RS15420at 2911.623 kb on + strand, within SGL_RS15420at 2911.631 kb on - strand, within SGL_RS15420at 2911.631 kb on - strand, within SGL_RS15420at 2911.902 kb on - strandat 2912.025 kb on + strandat 2912.092 kb on + strandat 2912.133 kb on - strand, within SGL_RS15425at 2912.240 kb on - strand, within SGL_RS15425at 2912.240 kb on - strand, within SGL_RS15425at 2912.334 kb on + strand, within SGL_RS15425at 2912.337 kb on - strand, within SGL_RS15425at 2912.622 kb on - strand, within SGL_RS15425at 2912.779 kb on + strand, within SGL_RS15425at 2912.842 kb on + strand, within SGL_RS15425

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth
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2,910,217 - SGL_RS15415 0.26 -1.2
2,910,365 + SGL_RS15415 0.42 +0.8
2,910,606 + SGL_RS15415 0.69 +0.6
2,910,870 - -0.5
2,910,889 + +0.4
2,910,889 + +0.3
2,910,904 + -1.8
2,910,904 - +0.6
2,910,929 - +0.7
2,910,929 - +0.7
2,910,941 - +0.3
2,910,950 - +0.5
2,911,146 - +0.7
2,911,504 + SGL_RS15420 0.52 +0.6
2,911,623 + SGL_RS15420 0.68 +0.5
2,911,631 - SGL_RS15420 0.69 +0.3
2,911,631 - SGL_RS15420 0.69 +1.0
2,911,902 - +0.4
2,912,025 + -2.3
2,912,092 + +0.5
2,912,133 - SGL_RS15425 0.14 -1.3
2,912,240 - SGL_RS15425 0.24 -1.9
2,912,240 - SGL_RS15425 0.24 -1.9
2,912,334 + SGL_RS15425 0.32 -1.2
2,912,337 - SGL_RS15425 0.33 -1.8
2,912,622 - SGL_RS15425 0.60 -1.6
2,912,779 + SGL_RS15425 0.75 -1.8
2,912,842 + SGL_RS15425 0.80 -1.5

Or see this region's nucleotide sequence