Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15415

Experiment: growth in full media and 10 mM glucose= photomixotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15405 and SGL_RS15410 are separated by 109 nucleotidesSGL_RS15410 and SGL_RS15415 are separated by 173 nucleotidesSGL_RS15415 and SGL_RS15420 are separated by 226 nucleotides SGL_RS15405: SGL_RS15405 - methyltransferase domain-containing protein, at 2,908,175 to 2,909,383 _RS15405 SGL_RS15410: SGL_RS15410 - circadian clock KaiB family protein, at 2,909,493 to 2,909,801 _RS15410 SGL_RS15415: SGL_RS15415 - response regulator, at 2,909,975 to 2,910,895 _RS15415 SGL_RS15420: SGL_RS15420 - DevA family ABC transporter ATP-binding protein, at 2,911,122 to 2,911,859 _RS15420 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -2 -1 0 1at 2909.070 kb on - strand, within SGL_RS15405at 2909.108 kb on + strand, within SGL_RS15405at 2909.126 kb on + strand, within SGL_RS15405at 2909.306 kb on + strandat 2909.314 kb on - strandat 2909.321 kb on - strandat 2909.322 kb on - strandat 2909.334 kb on + strandat 2909.334 kb on + strandat 2909.334 kb on + strandat 2909.344 kb on - strandat 2909.345 kb on + strandat 2909.345 kb on + strandat 2909.353 kb on - strandat 2909.370 kb on + strandat 2909.378 kb on - strandat 2909.423 kb on - strandat 2909.623 kb on - strand, within SGL_RS15410at 2909.650 kb on + strand, within SGL_RS15410at 2910.217 kb on - strand, within SGL_RS15415at 2910.365 kb on + strand, within SGL_RS15415at 2910.606 kb on + strand, within SGL_RS15415at 2910.870 kb on - strandat 2910.889 kb on + strandat 2910.889 kb on + strandat 2910.904 kb on + strandat 2910.904 kb on - strandat 2910.929 kb on - strandat 2910.929 kb on - strandat 2910.941 kb on - strandat 2910.950 kb on - strandat 2911.146 kb on - strandat 2911.504 kb on + strand, within SGL_RS15420at 2911.623 kb on + strand, within SGL_RS15420at 2911.631 kb on - strand, within SGL_RS15420at 2911.631 kb on - strand, within SGL_RS15420

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth
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2,909,070 - SGL_RS15405 0.74 -0.9
2,909,108 + SGL_RS15405 0.77 -0.6
2,909,126 + SGL_RS15405 0.79 -1.2
2,909,306 + -1.1
2,909,314 - -1.4
2,909,321 - -0.4
2,909,322 - +1.4
2,909,334 + -1.8
2,909,334 + -1.5
2,909,334 + +0.4
2,909,344 - -0.6
2,909,345 + +1.6
2,909,345 + +0.3
2,909,353 - -2.5
2,909,370 + +1.0
2,909,378 - +0.5
2,909,423 - +0.1
2,909,623 - SGL_RS15410 0.42 -0.0
2,909,650 + SGL_RS15410 0.51 +0.9
2,910,217 - SGL_RS15415 0.26 -1.2
2,910,365 + SGL_RS15415 0.42 +0.8
2,910,606 + SGL_RS15415 0.69 +0.6
2,910,870 - -0.5
2,910,889 + +0.4
2,910,889 + +0.3
2,910,904 + -1.8
2,910,904 - +0.6
2,910,929 - +0.7
2,910,929 - +0.7
2,910,941 - +0.3
2,910,950 - +0.5
2,911,146 - +0.7
2,911,504 + SGL_RS15420 0.52 +0.6
2,911,623 + SGL_RS15420 0.68 +0.5
2,911,631 - SGL_RS15420 0.69 +0.3
2,911,631 - SGL_RS15420 0.69 +1.0

Or see this region's nucleotide sequence