Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15325

Experiment: growth in full media and 10 mM glucose= photomixotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15320 and SGL_RS15325 are separated by 142 nucleotidesSGL_RS15325 and SGL_RS15330 are separated by 245 nucleotidesSGL_RS15330 and SGL_RS15335 are separated by 2 nucleotides SGL_RS15320: SGL_RS15320 - DEAD/DEAH box helicase, at 2,887,644 to 2,889,122 _RS15320 SGL_RS15325: SGL_RS15325 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,889,265 to 2,890,320 _RS15325 SGL_RS15330: SGL_RS15330 - imidazole glycerol phosphate synthase subunit HisH, at 2,890,566 to 2,891,198 _RS15330 SGL_RS15335: SGL_RS15335 - threonine--tRNA ligase, at 2,891,201 to 2,893,012 _RS15335 Position (kb) 2889 2890 2891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2888.266 kb on + strand, within SGL_RS15320at 2888.276 kb on + strand, within SGL_RS15320at 2888.599 kb on + strand, within SGL_RS15320at 2888.682 kb on + strand, within SGL_RS15320at 2888.706 kb on + strand, within SGL_RS15320at 2888.831 kb on - strand, within SGL_RS15320at 2888.897 kb on - strand, within SGL_RS15320at 2889.062 kb on + strandat 2889.203 kb on - strandat 2889.389 kb on - strand, within SGL_RS15325at 2889.616 kb on + strand, within SGL_RS15325at 2890.085 kb on + strand, within SGL_RS15325at 2890.119 kb on - strand, within SGL_RS15325at 2890.469 kb on + strandat 2890.542 kb on + strandat 2890.550 kb on - strandat 2890.689 kb on - strand, within SGL_RS15330

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth
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2,888,266 + SGL_RS15320 0.42 -3.5
2,888,276 + SGL_RS15320 0.43 -1.9
2,888,599 + SGL_RS15320 0.65 -0.3
2,888,682 + SGL_RS15320 0.70 -2.6
2,888,706 + SGL_RS15320 0.72 -0.6
2,888,831 - SGL_RS15320 0.80 +1.2
2,888,897 - SGL_RS15320 0.85 -3.1
2,889,062 + -3.9
2,889,203 - -0.5
2,889,389 - SGL_RS15325 0.12 +1.2
2,889,616 + SGL_RS15325 0.33 +0.2
2,890,085 + SGL_RS15325 0.78 +0.5
2,890,119 - SGL_RS15325 0.81 +0.8
2,890,469 + -1.2
2,890,542 + +1.8
2,890,550 - +2.8
2,890,689 - SGL_RS15330 0.19 +0.5

Or see this region's nucleotide sequence