Experiment: growth in full media and 10 mM glucose= photomixotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08610 and SGL_RS08615 are separated by 40 nucleotides SGL_RS08615 and SGL_RS08620 are separated by 26 nucleotides SGL_RS08620 and SGL_RS08625 are separated by 101 nucleotides SGL_RS08625 and SGL_RS08630 are separated by 60 nucleotides
SGL_RS08610: SGL_RS08610 - adenylate/guanylate cyclase domain-containing protein, at 1,435,645 to 1,436,658
_RS08610
SGL_RS08615: SGL_RS08615 - glutathione peroxidase, at 1,436,699 to 1,437,163
_RS08615
SGL_RS08620: SGL_RS08620 - thiolase family protein, at 1,437,190 to 1,438,602
_RS08620
SGL_RS08625: SGL_RS08625 - SDR family oxidoreductase, at 1,438,704 to 1,439,426
_RS08625
SGL_RS08630: SGL_RS08630 - PucC family protein, at 1,439,487 to 1,440,941
_RS08630
Position (kb) 1437
1438
1439 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1436.305 kb on + strand, within SGL_RS08610 at 1436.384 kb on + strand, within SGL_RS08610 at 1436.502 kb on - strand, within SGL_RS08610 at 1436.550 kb on + strand, within SGL_RS08610 at 1436.558 kb on - strand at 1436.601 kb on - strand at 1436.619 kb on - strand at 1436.629 kb on - strand at 1436.651 kb on + strand at 1436.732 kb on - strand at 1436.751 kb on - strand, within SGL_RS08615 at 1436.818 kb on - strand, within SGL_RS08615 at 1436.831 kb on + strand, within SGL_RS08615 at 1436.831 kb on - strand, within SGL_RS08615 at 1436.836 kb on + strand, within SGL_RS08615 at 1436.868 kb on + strand, within SGL_RS08615 at 1436.998 kb on - strand, within SGL_RS08615 at 1437.197 kb on + strand at 1437.389 kb on + strand, within SGL_RS08620 at 1437.448 kb on + strand, within SGL_RS08620 at 1437.450 kb on + strand, within SGL_RS08620 at 1437.551 kb on + strand, within SGL_RS08620 at 1437.551 kb on + strand, within SGL_RS08620 at 1437.584 kb on + strand, within SGL_RS08620 at 1437.619 kb on + strand, within SGL_RS08620 at 1437.659 kb on - strand, within SGL_RS08620 at 1437.659 kb on - strand, within SGL_RS08620 at 1437.696 kb on + strand, within SGL_RS08620 at 1437.696 kb on + strand, within SGL_RS08620 at 1437.706 kb on + strand, within SGL_RS08620 at 1437.951 kb on - strand, within SGL_RS08620 at 1437.956 kb on - strand, within SGL_RS08620 at 1438.051 kb on + strand, within SGL_RS08620 at 1438.077 kb on - strand, within SGL_RS08620 at 1438.194 kb on - strand, within SGL_RS08620 at 1438.332 kb on + strand, within SGL_RS08620 at 1438.443 kb on + strand, within SGL_RS08620 at 1438.496 kb on + strand at 1438.499 kb on - strand at 1438.506 kb on + strand at 1438.509 kb on - strand at 1438.594 kb on - strand at 1438.596 kb on + strand at 1438.596 kb on + strand at 1438.604 kb on - strand at 1438.637 kb on - strand at 1438.981 kb on + strand, within SGL_RS08625 at 1439.120 kb on + strand, within SGL_RS08625 at 1439.203 kb on + strand, within SGL_RS08625 at 1439.207 kb on - strand, within SGL_RS08625 at 1439.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth remove 1,436,305 + SGL_RS08610 0.65 +1.1 1,436,384 + SGL_RS08610 0.73 +1.8 1,436,502 - SGL_RS08610 0.85 +1.2 1,436,550 + SGL_RS08610 0.89 +1.1 1,436,558 - +0.6 1,436,601 - +1.7 1,436,619 - +2.0 1,436,629 - +1.5 1,436,651 + -0.8 1,436,732 - +0.6 1,436,751 - SGL_RS08615 0.11 -0.9 1,436,818 - SGL_RS08615 0.26 +1.0 1,436,831 + SGL_RS08615 0.28 -0.9 1,436,831 - SGL_RS08615 0.28 -1.5 1,436,836 + SGL_RS08615 0.29 -0.4 1,436,868 + SGL_RS08615 0.36 -0.4 1,436,998 - SGL_RS08615 0.64 -1.0 1,437,197 + -1.0 1,437,389 + SGL_RS08620 0.14 +0.5 1,437,448 + SGL_RS08620 0.18 -2.6 1,437,450 + SGL_RS08620 0.18 -0.6 1,437,551 + SGL_RS08620 0.26 -0.5 1,437,551 + SGL_RS08620 0.26 -0.3 1,437,584 + SGL_RS08620 0.28 +0.2 1,437,619 + SGL_RS08620 0.30 +0.0 1,437,659 - SGL_RS08620 0.33 +0.8 1,437,659 - SGL_RS08620 0.33 -0.2 1,437,696 + SGL_RS08620 0.36 +0.5 1,437,696 + SGL_RS08620 0.36 +0.1 1,437,706 + SGL_RS08620 0.37 -0.3 1,437,951 - SGL_RS08620 0.54 +0.2 1,437,956 - SGL_RS08620 0.54 +0.5 1,438,051 + SGL_RS08620 0.61 +0.7 1,438,077 - SGL_RS08620 0.63 -0.4 1,438,194 - SGL_RS08620 0.71 -1.5 1,438,332 + SGL_RS08620 0.81 -0.6 1,438,443 + SGL_RS08620 0.89 +0.6 1,438,496 + -0.8 1,438,499 - -1.7 1,438,506 + +0.7 1,438,509 - -0.9 1,438,594 - -0.7 1,438,596 + -1.1 1,438,596 + -0.2 1,438,604 - -1.0 1,438,637 - +0.5 1,438,981 + SGL_RS08625 0.38 +0.5 1,439,120 + SGL_RS08625 0.58 -0.7 1,439,203 + SGL_RS08625 0.69 -1.5 1,439,207 - SGL_RS08625 0.70 -0.4 1,439,494 + +0.2
Or see this region's nucleotide sequence