Experiment: growth in full media and 10 mM glucose= photomixotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04470 and SGL_RS04475 are separated by 35 nucleotides SGL_RS04475 and SGL_RS04480 are separated by 110 nucleotides SGL_RS04480 and SGL_RS04485 are separated by 17 nucleotides SGL_RS04485 and SGL_RS04490 are separated by 50 nucleotides
SGL_RS04470: SGL_RS04470 - mercuric reductase, at 557,423 to 558,979
_RS04470
SGL_RS04475: SGL_RS04475 - hypothetical protein, at 559,015 to 559,350
_RS04475
SGL_RS04480: SGL_RS04480 - urease subunit alpha, at 559,461 to 561,170
_RS04480
SGL_RS04485: SGL_RS04485 - DUF29 domain-containing protein, at 561,188 to 561,658
_RS04485
SGL_RS04490: SGL_RS04490 - 2TM domain-containing protein, at 561,709 to 561,963
_RS04490
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 558.534 kb on + strand, within SGL_RS04470 at 558.640 kb on - strand, within SGL_RS04470 at 558.869 kb on - strand at 558.879 kb on - strand at 559.057 kb on + strand, within SGL_RS04475 at 559.446 kb on - strand at 559.491 kb on - strand at 559.644 kb on - strand, within SGL_RS04480 at 559.879 kb on + strand, within SGL_RS04480 at 560.044 kb on + strand, within SGL_RS04480 at 560.070 kb on + strand, within SGL_RS04480 at 560.209 kb on - strand, within SGL_RS04480 at 560.213 kb on + strand, within SGL_RS04480 at 560.259 kb on - strand, within SGL_RS04480 at 560.323 kb on + strand, within SGL_RS04480 at 560.427 kb on + strand, within SGL_RS04480 at 560.432 kb on - strand, within SGL_RS04480 at 560.444 kb on - strand, within SGL_RS04480 at 560.451 kb on + strand, within SGL_RS04480 at 560.472 kb on - strand, within SGL_RS04480 at 560.513 kb on + strand, within SGL_RS04480 at 560.645 kb on + strand, within SGL_RS04480 at 560.686 kb on - strand, within SGL_RS04480 at 560.695 kb on + strand, within SGL_RS04480 at 560.703 kb on - strand, within SGL_RS04480 at 560.731 kb on + strand, within SGL_RS04480 at 560.793 kb on - strand, within SGL_RS04480 at 560.855 kb on + strand, within SGL_RS04480 at 560.859 kb on + strand, within SGL_RS04480 at 560.993 kb on - strand, within SGL_RS04480 at 561.223 kb on + strand at 561.236 kb on + strand, within SGL_RS04485 at 561.247 kb on + strand, within SGL_RS04485 at 561.281 kb on + strand, within SGL_RS04485 at 561.289 kb on - strand, within SGL_RS04485 at 561.387 kb on + strand, within SGL_RS04485 at 561.395 kb on - strand, within SGL_RS04485 at 561.400 kb on + strand, within SGL_RS04485 at 561.568 kb on + strand, within SGL_RS04485 at 561.675 kb on - strand at 561.683 kb on - strand at 561.684 kb on + strand at 561.705 kb on + strand at 561.819 kb on - strand, within SGL_RS04490 at 561.852 kb on - strand, within SGL_RS04490 at 561.926 kb on - strand, within SGL_RS04490 at 561.946 kb on - strand at 561.956 kb on - strand at 562.093 kb on - strand at 562.104 kb on - strand at 562.127 kb on - strand at 562.165 kb on + strand at 562.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth remove 558,534 + SGL_RS04470 0.71 -1.1 558,640 - SGL_RS04470 0.78 -0.9 558,869 - +0.2 558,879 - +0.2 559,057 + SGL_RS04475 0.12 +0.6 559,446 - +0.2 559,491 - +2.1 559,644 - SGL_RS04480 0.11 -0.7 559,879 + SGL_RS04480 0.24 -0.9 560,044 + SGL_RS04480 0.34 -0.3 560,070 + SGL_RS04480 0.36 +1.7 560,209 - SGL_RS04480 0.44 -1.3 560,213 + SGL_RS04480 0.44 -0.1 560,259 - SGL_RS04480 0.47 +1.1 560,323 + SGL_RS04480 0.50 -0.1 560,427 + SGL_RS04480 0.56 -0.5 560,432 - SGL_RS04480 0.57 -0.7 560,444 - SGL_RS04480 0.57 -0.7 560,451 + SGL_RS04480 0.58 -0.6 560,472 - SGL_RS04480 0.59 -0.9 560,513 + SGL_RS04480 0.62 -0.3 560,645 + SGL_RS04480 0.69 -1.1 560,686 - SGL_RS04480 0.72 -1.1 560,695 + SGL_RS04480 0.72 +0.4 560,703 - SGL_RS04480 0.73 -0.4 560,731 + SGL_RS04480 0.74 +0.4 560,793 - SGL_RS04480 0.78 -0.6 560,855 + SGL_RS04480 0.82 -0.5 560,859 + SGL_RS04480 0.82 -1.1 560,993 - SGL_RS04480 0.90 -0.1 561,223 + -0.6 561,236 + SGL_RS04485 0.10 -1.8 561,247 + SGL_RS04485 0.13 +0.4 561,281 + SGL_RS04485 0.20 +0.3 561,289 - SGL_RS04485 0.21 -0.4 561,387 + SGL_RS04485 0.42 -0.1 561,395 - SGL_RS04485 0.44 +1.4 561,400 + SGL_RS04485 0.45 -0.9 561,568 + SGL_RS04485 0.81 +0.1 561,675 - -1.6 561,683 - -0.9 561,684 + -0.9 561,705 + -0.2 561,819 - SGL_RS04490 0.43 +0.7 561,852 - SGL_RS04490 0.56 +1.5 561,926 - SGL_RS04490 0.85 -0.8 561,946 - -0.4 561,956 - +1.9 562,093 - +0.4 562,104 - +0.9 562,127 - -0.3 562,165 + -1.9 562,168 - +0.7
Or see this region's nucleotide sequence