Experiment: growth in full media and 10 mM glucose= photomixotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02025 and SGL_RS02030 are separated by 203 nucleotides SGL_RS02030 and SGL_RS02035 are separated by 113 nucleotides
SGL_RS02025: SGL_RS02025 - TonB-dependent receptor, at 39,817 to 42,363
_RS02025
SGL_RS02030: SGL_RS02030 - iron-siderophore ABC transporter substrate-binding protein, at 42,567 to 43,397
_RS02030
SGL_RS02035: SGL_RS02035 - iron-siderophore ABC transporter substrate-binding protein, at 43,511 to 44,506
_RS02035
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.873 kb on - strand, within SGL_RS02025 at 41.930 kb on - strand, within SGL_RS02025 at 41.995 kb on + strand, within SGL_RS02025 at 42.117 kb on + strand at 42.245 kb on - strand at 42.523 kb on - strand at 42.593 kb on + strand at 42.604 kb on + strand at 42.612 kb on - strand at 42.612 kb on - strand at 42.620 kb on - strand at 42.703 kb on + strand, within SGL_RS02030 at 42.711 kb on - strand, within SGL_RS02030 at 42.744 kb on + strand, within SGL_RS02030 at 42.744 kb on - strand, within SGL_RS02030 at 42.825 kb on - strand, within SGL_RS02030 at 42.844 kb on + strand, within SGL_RS02030 at 42.935 kb on - strand, within SGL_RS02030 at 42.960 kb on + strand, within SGL_RS02030 at 42.978 kb on - strand, within SGL_RS02030 at 42.995 kb on + strand, within SGL_RS02030 at 42.995 kb on + strand, within SGL_RS02030 at 42.995 kb on + strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.014 kb on - strand, within SGL_RS02030 at 43.148 kb on + strand, within SGL_RS02030 at 43.148 kb on - strand, within SGL_RS02030 at 43.223 kb on - strand, within SGL_RS02030 at 43.255 kb on + strand, within SGL_RS02030 at 43.304 kb on + strand, within SGL_RS02030 at 43.304 kb on + strand, within SGL_RS02030 at 43.312 kb on - strand, within SGL_RS02030 at 43.312 kb on - strand, within SGL_RS02030 at 43.312 kb on - strand, within SGL_RS02030 at 43.362 kb on - strand at 43.397 kb on + strand at 43.400 kb on - strand at 43.412 kb on + strand at 43.473 kb on - strand at 43.565 kb on + strand at 43.638 kb on + strand, within SGL_RS02035 at 43.663 kb on - strand, within SGL_RS02035 at 43.703 kb on - strand, within SGL_RS02035 at 43.728 kb on + strand, within SGL_RS02035 at 43.877 kb on - strand, within SGL_RS02035 at 43.995 kb on - strand, within SGL_RS02035 at 44.115 kb on + strand, within SGL_RS02035 at 44.123 kb on + strand, within SGL_RS02035 at 44.123 kb on + strand, within SGL_RS02035 at 44.123 kb on - strand, within SGL_RS02035 at 44.157 kb on + strand, within SGL_RS02035 at 44.170 kb on - strand, within SGL_RS02035 at 44.170 kb on - strand, within SGL_RS02035 at 44.203 kb on + strand, within SGL_RS02035 at 44.267 kb on + strand, within SGL_RS02035 at 44.329 kb on - strand, within SGL_RS02035 at 44.386 kb on + strand, within SGL_RS02035 at 44.386 kb on + strand, within SGL_RS02035 at 44.394 kb on - strand, within SGL_RS02035 at 44.394 kb on - strand, within SGL_RS02035 at 44.394 kb on - strand, within SGL_RS02035
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth remove 41,873 - SGL_RS02025 0.81 +1.0 41,930 - SGL_RS02025 0.83 -2.0 41,995 + SGL_RS02025 0.86 -0.8 42,117 + +0.1 42,245 - -1.6 42,523 - +0.1 42,593 + +1.0 42,604 + +1.1 42,612 - -0.9 42,612 - +0.5 42,620 - +0.7 42,703 + SGL_RS02030 0.16 +1.1 42,711 - SGL_RS02030 0.17 -0.1 42,744 + SGL_RS02030 0.21 +0.1 42,744 - SGL_RS02030 0.21 -0.4 42,825 - SGL_RS02030 0.31 +2.3 42,844 + SGL_RS02030 0.33 -0.6 42,935 - SGL_RS02030 0.44 +0.6 42,960 + SGL_RS02030 0.47 -1.3 42,978 - SGL_RS02030 0.49 +0.4 42,995 + SGL_RS02030 0.52 -0.9 42,995 + SGL_RS02030 0.52 -0.4 42,995 + SGL_RS02030 0.52 -0.7 43,003 - SGL_RS02030 0.52 +0.5 43,003 - SGL_RS02030 0.52 +1.3 43,003 - SGL_RS02030 0.52 +1.1 43,003 - SGL_RS02030 0.52 -0.8 43,003 - SGL_RS02030 0.52 +0.2 43,014 - SGL_RS02030 0.54 -0.3 43,148 + SGL_RS02030 0.70 +0.0 43,148 - SGL_RS02030 0.70 +0.6 43,223 - SGL_RS02030 0.79 +0.1 43,255 + SGL_RS02030 0.83 -1.5 43,304 + SGL_RS02030 0.89 -0.4 43,304 + SGL_RS02030 0.89 +0.1 43,312 - SGL_RS02030 0.90 -1.1 43,312 - SGL_RS02030 0.90 +0.3 43,312 - SGL_RS02030 0.90 +1.4 43,362 - -0.6 43,397 + -0.1 43,400 - +1.4 43,412 + +0.0 43,473 - -0.1 43,565 + -2.1 43,638 + SGL_RS02035 0.13 +0.4 43,663 - SGL_RS02035 0.15 -0.6 43,703 - SGL_RS02035 0.19 +1.1 43,728 + SGL_RS02035 0.22 +0.2 43,877 - SGL_RS02035 0.37 -1.3 43,995 - SGL_RS02035 0.49 -1.2 44,115 + SGL_RS02035 0.61 +0.2 44,123 + SGL_RS02035 0.61 +0.3 44,123 + SGL_RS02035 0.61 -0.2 44,123 - SGL_RS02035 0.61 -1.1 44,157 + SGL_RS02035 0.65 -0.4 44,170 - SGL_RS02035 0.66 +0.7 44,170 - SGL_RS02035 0.66 -0.9 44,203 + SGL_RS02035 0.69 +0.3 44,267 + SGL_RS02035 0.76 +0.4 44,329 - SGL_RS02035 0.82 -0.4 44,386 + SGL_RS02035 0.88 -1.9 44,386 + SGL_RS02035 0.88 -0.8 44,394 - SGL_RS02035 0.89 +0.7 44,394 - SGL_RS02035 0.89 -0.7 44,394 - SGL_RS02035 0.89 +1.5
Or see this region's nucleotide sequence