Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01795

Experiment: growth in full media and 10 mM glucose= photomixotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01785 and SGL_RS19740 are separated by 31 nucleotidesSGL_RS19740 and SGL_RS19330 overlap by 50 nucleotidesSGL_RS19330 and SGL_RS01795 are separated by 140 nucleotidesSGL_RS01795 and SGL_RS01800 overlap by 8 nucleotidesSGL_RS01800 and SGL_RS18620 are separated by 239 nucleotides SGL_RS01785: SGL_RS01785 - hypothetical protein, at 82,861 to 86,385 _RS01785 SGL_RS19740: SGL_RS19740 - DNA cytosine methyltransferase, at 86,417 to 86,521 _RS19740 SGL_RS19330: SGL_RS19330 - hypothetical protein, at 86,472 to 86,870 _RS19330 SGL_RS01795: SGL_RS01795 - hypothetical protein, at 87,011 to 87,265 _RS01795 SGL_RS01800: SGL_RS01800 - ParA family protein, at 87,258 to 87,854 _RS01800 SGL_RS18620: SGL_RS18620 - HNH endonuclease, at 88,094 to 88,417 _RS18620 Position (kb) 87 88Strain fitness (log2 ratio) -1 0 1 2 3at 86.235 kb on + strandat 86.303 kb on - strandat 86.493 kb on + strandat 86.574 kb on - strand, within SGL_RS19330at 86.574 kb on - strand, within SGL_RS19330at 86.642 kb on - strand, within SGL_RS19330at 86.647 kb on - strand, within SGL_RS19330at 86.708 kb on + strand, within SGL_RS19330at 86.801 kb on - strand, within SGL_RS19330at 86.875 kb on + strandat 86.883 kb on - strandat 87.052 kb on + strand, within SGL_RS01795at 87.076 kb on - strand, within SGL_RS01795at 87.086 kb on - strand, within SGL_RS01795at 87.093 kb on - strand, within SGL_RS01795at 87.204 kb on - strand, within SGL_RS01795at 87.311 kb on - strandat 87.337 kb on - strand, within SGL_RS01800at 87.338 kb on + strand, within SGL_RS01800at 87.348 kb on - strand, within SGL_RS01800at 87.366 kb on - strand, within SGL_RS01800at 87.407 kb on + strand, within SGL_RS01800at 87.448 kb on + strand, within SGL_RS01800at 87.562 kb on - strand, within SGL_RS01800at 87.637 kb on - strand, within SGL_RS01800at 87.665 kb on + strand, within SGL_RS01800at 87.718 kb on + strand, within SGL_RS01800at 87.726 kb on - strand, within SGL_RS01800at 87.726 kb on - strand, within SGL_RS01800at 87.736 kb on - strand, within SGL_RS01800at 87.738 kb on + strand, within SGL_RS01800at 87.738 kb on + strand, within SGL_RS01800at 87.794 kb on + strand, within SGL_RS01800at 87.802 kb on - strandat 87.802 kb on - strandat 87.973 kb on - strandat 88.017 kb on + strandat 88.105 kb on + strandat 88.189 kb on - strand, within SGL_RS18620at 88.202 kb on - strand, within SGL_RS18620

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photomixotrophic growth
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86,235 + -1.6
86,303 - +2.0
86,493 + -1.4
86,574 - SGL_RS19330 0.26 -0.0
86,574 - SGL_RS19330 0.26 -1.4
86,642 - SGL_RS19330 0.43 -1.5
86,647 - SGL_RS19330 0.44 -0.1
86,708 + SGL_RS19330 0.59 +0.5
86,801 - SGL_RS19330 0.82 -1.0
86,875 + -0.6
86,883 - -0.3
87,052 + SGL_RS01795 0.16 +0.8
87,076 - SGL_RS01795 0.25 -1.4
87,086 - SGL_RS01795 0.29 -1.6
87,093 - SGL_RS01795 0.32 -0.3
87,204 - SGL_RS01795 0.76 -0.3
87,311 - -0.5
87,337 - SGL_RS01800 0.13 +0.0
87,338 + SGL_RS01800 0.13 +1.5
87,348 - SGL_RS01800 0.15 +2.5
87,366 - SGL_RS01800 0.18 -1.1
87,407 + SGL_RS01800 0.25 -0.9
87,448 + SGL_RS01800 0.32 -0.1
87,562 - SGL_RS01800 0.51 +0.2
87,637 - SGL_RS01800 0.63 +0.2
87,665 + SGL_RS01800 0.68 +0.3
87,718 + SGL_RS01800 0.77 +3.5
87,726 - SGL_RS01800 0.78 -0.4
87,726 - SGL_RS01800 0.78 -1.5
87,736 - SGL_RS01800 0.80 +0.2
87,738 + SGL_RS01800 0.80 -0.9
87,738 + SGL_RS01800 0.80 -0.8
87,794 + SGL_RS01800 0.90 -0.5
87,802 - -0.5
87,802 - +0.5
87,973 - -0.9
88,017 + -1.2
88,105 + +1.0
88,189 - SGL_RS18620 0.29 +0.1
88,202 - SGL_RS18620 0.33 -0.6

Or see this region's nucleotide sequence