Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19620

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13080 and SGL_RS13085 are separated by 91 nucleotidesSGL_RS13085 and SGL_RS19620 are separated by 105 nucleotidesSGL_RS19620 and SGL_RS13090 are separated by 152 nucleotides SGL_RS13080: SGL_RS13080 - rhodanese-related sulfurtransferase, at 2,406,130 to 2,406,966 _RS13080 SGL_RS13085: SGL_RS13085 - tRNA-Ala, at 2,407,058 to 2,407,130 _RS13085 SGL_RS19620: SGL_RS19620 - hypothetical protein, at 2,407,236 to 2,407,412 _RS19620 SGL_RS13090: SGL_RS13090 - urea ABC transporter ATP-binding protein UrtD, at 2,407,565 to 2,408,686 _RS13090 Position (kb) 2407 2408Strain fitness (log2 ratio) -1 0 1at 2406.722 kb on + strand, within SGL_RS13080at 2406.760 kb on + strand, within SGL_RS13080at 2406.920 kb on + strandat 2406.928 kb on - strandat 2406.999 kb on + strandat 2407.394 kb on + strand, within SGL_RS19620at 2407.507 kb on - strandat 2407.759 kb on + strand, within SGL_RS13090at 2407.810 kb on + strand, within SGL_RS13090at 2408.019 kb on + strand, within SGL_RS13090at 2408.020 kb on - strand, within SGL_RS13090at 2408.025 kb on - strand, within SGL_RS13090at 2408.246 kb on + strand, within SGL_RS13090at 2408.302 kb on + strand, within SGL_RS13090at 2408.310 kb on - strand, within SGL_RS13090at 2408.325 kb on + strand, within SGL_RS13090at 2408.325 kb on - strand, within SGL_RS13090at 2408.404 kb on + strand, within SGL_RS13090

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,406,722 + SGL_RS13080 0.71 +0.2
2,406,760 + SGL_RS13080 0.75 -1.6
2,406,920 + +0.3
2,406,928 - -0.3
2,406,999 + +0.0
2,407,394 + SGL_RS19620 0.89 -0.9
2,407,507 - -0.2
2,407,759 + SGL_RS13090 0.17 -0.1
2,407,810 + SGL_RS13090 0.22 -0.2
2,408,019 + SGL_RS13090 0.40 -0.6
2,408,020 - SGL_RS13090 0.41 -0.9
2,408,025 - SGL_RS13090 0.41 +0.7
2,408,246 + SGL_RS13090 0.61 +0.0
2,408,302 + SGL_RS13090 0.66 +0.9
2,408,310 - SGL_RS13090 0.66 +0.5
2,408,325 + SGL_RS13090 0.68 -0.2
2,408,325 - SGL_RS13090 0.68 -0.0
2,408,404 + SGL_RS13090 0.75 +0.8

Or see this region's nucleotide sequence