Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14685

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14675 and SGL_RS14680 are separated by 167 nucleotidesSGL_RS14680 and SGL_RS14685 are separated by 126 nucleotidesSGL_RS14685 and SGL_RS14690 are separated by 269 nucleotides SGL_RS14675: SGL_RS14675 - peptidylprolyl isomerase, at 2,744,987 to 2,745,766 _RS14675 SGL_RS14680: SGL_RS14680 - ferredoxin-thioredoxin reductase variable chain, at 2,745,934 to 2,746,161 _RS14680 SGL_RS14685: SGL_RS14685 - hypothetical protein, at 2,746,288 to 2,747,334 _RS14685 SGL_RS14690: SGL_RS14690 - HAMP domain-containing sensor histidine kinase, at 2,747,604 to 2,748,857 _RS14690 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -1 0 1at 2745.461 kb on - strand, within SGL_RS14675at 2745.653 kb on + strand, within SGL_RS14675at 2745.755 kb on + strandat 2746.139 kb on + strandat 2746.293 kb on - strandat 2746.396 kb on - strand, within SGL_RS14685at 2746.600 kb on + strand, within SGL_RS14685at 2746.799 kb on - strand, within SGL_RS14685at 2746.833 kb on + strand, within SGL_RS14685at 2746.961 kb on + strand, within SGL_RS14685at 2747.336 kb on - strandat 2747.618 kb on + strandat 2747.653 kb on + strandat 2747.732 kb on - strand, within SGL_RS14690at 2747.786 kb on - strand, within SGL_RS14690at 2747.804 kb on + strand, within SGL_RS14690at 2747.812 kb on - strand, within SGL_RS14690at 2747.869 kb on - strand, within SGL_RS14690at 2747.886 kb on + strand, within SGL_RS14690at 2748.238 kb on + strand, within SGL_RS14690

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,745,461 - SGL_RS14675 0.61 -0.5
2,745,653 + SGL_RS14675 0.85 +0.3
2,745,755 + -0.4
2,746,139 + -0.3
2,746,293 - -0.0
2,746,396 - SGL_RS14685 0.10 -1.7
2,746,600 + SGL_RS14685 0.30 -0.2
2,746,799 - SGL_RS14685 0.49 -0.8
2,746,833 + SGL_RS14685 0.52 -0.4
2,746,961 + SGL_RS14685 0.64 -0.1
2,747,336 - -0.2
2,747,618 + -1.2
2,747,653 + -0.1
2,747,732 - SGL_RS14690 0.10 +0.4
2,747,786 - SGL_RS14690 0.15 -1.3
2,747,804 + SGL_RS14690 0.16 -0.4
2,747,812 - SGL_RS14690 0.17 +0.5
2,747,869 - SGL_RS14690 0.21 -0.8
2,747,886 + SGL_RS14690 0.22 -0.6
2,748,238 + SGL_RS14690 0.51 -0.1

Or see this region's nucleotide sequence