Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13670

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13660 and SGL_RS13665 are separated by 65 nucleotidesSGL_RS13665 and SGL_RS13670 are separated by 40 nucleotidesSGL_RS13670 and SGL_RS13675 are separated by 57 nucleotides SGL_RS13660: SGL_RS13660 - lipid-A-disaccharide synthase-related protein, at 2,535,487 to 2,536,758 _RS13660 SGL_RS13665: SGL_RS13665 - DedA family protein, at 2,536,824 to 2,537,480 _RS13665 SGL_RS13670: SGL_RS13670 - thioredoxin, at 2,537,521 to 2,537,838 _RS13670 SGL_RS13675: SGL_RS13675 - 2OG-Fe(II) oxygenase, at 2,537,896 to 2,538,807 _RS13675 Position (kb) 2537 2538Strain fitness (log2 ratio) -1 0 1at 2536.755 kb on + strandat 2536.885 kb on + strandat 2536.895 kb on - strand, within SGL_RS13665at 2536.950 kb on - strand, within SGL_RS13665at 2536.950 kb on - strand, within SGL_RS13665at 2537.075 kb on - strand, within SGL_RS13665at 2537.091 kb on + strand, within SGL_RS13665at 2537.099 kb on + strand, within SGL_RS13665at 2537.099 kb on - strand, within SGL_RS13665at 2537.118 kb on + strand, within SGL_RS13665at 2537.420 kb on - strandat 2537.592 kb on + strand, within SGL_RS13670at 2537.752 kb on - strand, within SGL_RS13670at 2538.608 kb on + strand, within SGL_RS13675

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,536,755 + +0.7
2,536,885 + +0.2
2,536,895 - SGL_RS13665 0.11 -0.4
2,536,950 - SGL_RS13665 0.19 -0.6
2,536,950 - SGL_RS13665 0.19 -0.0
2,537,075 - SGL_RS13665 0.38 -0.3
2,537,091 + SGL_RS13665 0.41 -0.1
2,537,099 + SGL_RS13665 0.42 -0.7
2,537,099 - SGL_RS13665 0.42 +0.2
2,537,118 + SGL_RS13665 0.45 +0.5
2,537,420 - +0.7
2,537,592 + SGL_RS13670 0.22 -1.1
2,537,752 - SGL_RS13670 0.73 -0.9
2,538,608 + SGL_RS13675 0.78 +0.1

Or see this region's nucleotide sequence