Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13435

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13430 and SGL_RS13435 are separated by 95 nucleotidesSGL_RS13435 and SGL_RS13440 are separated by 54 nucleotidesSGL_RS13440 and SGL_RS13445 are separated by 114 nucleotides SGL_RS13430: SGL_RS13430 - DUF4330 domain-containing protein, at 2,481,361 to 2,481,888 _RS13430 SGL_RS13435: SGL_RS13435 - MgtC/SapB family protein, at 2,481,984 to 2,482,688 _RS13435 SGL_RS13440: SGL_RS13440 - IS5 family transposase, at 2,482,743 to 2,483,528 _RS13440 SGL_RS13445: SGL_RS13445 - lipid-A-disaccharide synthase, at 2,483,643 to 2,484,827 _RS13445 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1at 2481.158 kb on - strandat 2481.940 kb on + strandat 2482.151 kb on + strand, within SGL_RS13435at 2482.216 kb on - strand, within SGL_RS13435

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,481,158 - -0.3
2,481,940 + -0.5
2,482,151 + SGL_RS13435 0.24 -2.2
2,482,216 - SGL_RS13435 0.33 -0.5

Or see this region's nucleotide sequence