Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12610

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12600 and SGL_RS12605 are separated by 115 nucleotidesSGL_RS12605 and SGL_RS12610 are separated by 188 nucleotidesSGL_RS12610 and SGL_RS12615 are separated by 51 nucleotidesSGL_RS12615 and SGL_RS12620 are separated by 266 nucleotides SGL_RS12600: SGL_RS12600 - DUF2062 domain-containing protein, at 2,284,791 to 2,285,294 _RS12600 SGL_RS12605: SGL_RS12605 - NYN domain-containing protein, at 2,285,410 to 2,285,997 _RS12605 SGL_RS12610: SGL_RS12610 - Uma2 family endonuclease, at 2,286,186 to 2,286,746 _RS12610 SGL_RS12615: SGL_RS12615 - helix-turn-helix transcriptional regulator, at 2,286,798 to 2,287,067 _RS12615 SGL_RS12620: SGL_RS12620 - photosystem I iron-sulfur center protein PsaC, at 2,287,334 to 2,287,579 _RS12620 Position (kb) 2286 2287Strain fitness (log2 ratio) -1 0 1 2at 2285.279 kb on - strandat 2285.465 kb on - strandat 2285.498 kb on + strand, within SGL_RS12605at 2285.506 kb on - strand, within SGL_RS12605at 2285.549 kb on - strand, within SGL_RS12605at 2285.570 kb on - strand, within SGL_RS12605at 2285.690 kb on - strand, within SGL_RS12605at 2285.785 kb on + strand, within SGL_RS12605at 2285.817 kb on - strand, within SGL_RS12605at 2285.850 kb on - strand, within SGL_RS12605at 2285.866 kb on - strand, within SGL_RS12605at 2285.891 kb on + strand, within SGL_RS12605at 2285.896 kb on + strand, within SGL_RS12605at 2285.973 kb on - strandat 2286.105 kb on - strandat 2286.189 kb on - strandat 2286.250 kb on + strand, within SGL_RS12610at 2286.974 kb on + strand, within SGL_RS12615at 2286.997 kb on - strand, within SGL_RS12615

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,285,279 - +2.3
2,285,465 - -0.3
2,285,498 + SGL_RS12605 0.15 -0.3
2,285,506 - SGL_RS12605 0.16 -0.2
2,285,549 - SGL_RS12605 0.24 -0.3
2,285,570 - SGL_RS12605 0.27 -0.1
2,285,690 - SGL_RS12605 0.48 -0.1
2,285,785 + SGL_RS12605 0.64 -0.2
2,285,817 - SGL_RS12605 0.69 -0.1
2,285,850 - SGL_RS12605 0.75 -0.6
2,285,866 - SGL_RS12605 0.78 -0.4
2,285,891 + SGL_RS12605 0.82 -0.4
2,285,896 + SGL_RS12605 0.83 -0.4
2,285,973 - -0.5
2,286,105 - -0.7
2,286,189 - -0.3
2,286,250 + SGL_RS12610 0.11 -0.6
2,286,974 + SGL_RS12615 0.65 -0.2
2,286,997 - SGL_RS12615 0.74 -0.5

Or see this region's nucleotide sequence