Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12275

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12270 and SGL_RS12275 are separated by 349 nucleotidesSGL_RS12275 and SGL_RS12280 are separated by 79 nucleotides SGL_RS12270: SGL_RS12270 - peptide chain release factor 2, at 2,214,685 to 2,215,801 _RS12270 SGL_RS12275: SGL_RS12275 - hypothetical protein, at 2,216,151 to 2,216,396 _RS12275 SGL_RS12280: SGL_RS12280 - chloride channel protein, at 2,216,476 to 2,219,175 _RS12280 Position (kb) 2216 2217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2215.855 kb on + strandat 2215.873 kb on - strandat 2216.232 kb on - strand, within SGL_RS12275at 2216.238 kb on + strand, within SGL_RS12275at 2216.538 kb on + strandat 2216.944 kb on - strand, within SGL_RS12280at 2216.990 kb on - strand, within SGL_RS12280at 2217.173 kb on + strand, within SGL_RS12280

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,215,855 + -0.1
2,215,873 - -0.0
2,216,232 - SGL_RS12275 0.33 -3.9
2,216,238 + SGL_RS12275 0.35 -2.9
2,216,538 + +0.2
2,216,944 - SGL_RS12280 0.17 +1.1
2,216,990 - SGL_RS12280 0.19 -0.5
2,217,173 + SGL_RS12280 0.26 +0.6

Or see this region's nucleotide sequence