Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09185

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18835 and SGL_RS09185 are separated by 44 nucleotidesSGL_RS09185 and SGL_RS09190 are separated by 272 nucleotides SGL_RS18835: SGL_RS18835 - IS1 family transposase, at 1,561,693 to 1,562,423 _RS18835 SGL_RS09185: SGL_RS09185 - group 1 truncated hemoglobin, at 1,562,468 to 1,562,842 _RS09185 SGL_RS09190: SGL_RS09190 - response regulator, at 1,563,115 to 1,566,900 _RS09190 Position (kb) 1562 1563Strain fitness (log2 ratio) -1 0 1at 1562.576 kb on + strand, within SGL_RS09185at 1562.829 kb on + strandat 1562.987 kb on + strandat 1563.070 kb on + strandat 1563.078 kb on - strandat 1563.119 kb on - strandat 1563.138 kb on + strandat 1563.146 kb on - strandat 1563.230 kb on - strandat 1563.307 kb on + strandat 1563.307 kb on + strandat 1563.525 kb on + strand, within SGL_RS09190at 1563.525 kb on + strand, within SGL_RS09190at 1563.525 kb on - strand, within SGL_RS09190at 1563.533 kb on - strand, within SGL_RS09190at 1563.633 kb on - strand, within SGL_RS09190at 1563.699 kb on + strand, within SGL_RS09190at 1563.707 kb on - strand, within SGL_RS09190at 1563.707 kb on - strand, within SGL_RS09190at 1563.722 kb on - strand, within SGL_RS09190at 1563.724 kb on + strand, within SGL_RS09190at 1563.837 kb on + strand, within SGL_RS09190

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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1,562,576 + SGL_RS09185 0.29 -0.8
1,562,829 + -0.0
1,562,987 + -0.1
1,563,070 + -1.0
1,563,078 - -0.4
1,563,119 - +0.2
1,563,138 + -0.5
1,563,146 - -0.4
1,563,230 - -0.3
1,563,307 + -0.2
1,563,307 + -0.1
1,563,525 + SGL_RS09190 0.11 -0.0
1,563,525 + SGL_RS09190 0.11 -0.2
1,563,525 - SGL_RS09190 0.11 -0.7
1,563,533 - SGL_RS09190 0.11 +0.6
1,563,633 - SGL_RS09190 0.14 -0.4
1,563,699 + SGL_RS09190 0.15 +0.8
1,563,707 - SGL_RS09190 0.16 -0.5
1,563,707 - SGL_RS09190 0.16 -0.3
1,563,722 - SGL_RS09190 0.16 -1.0
1,563,724 + SGL_RS09190 0.16 -0.2
1,563,837 + SGL_RS09190 0.19 -0.4

Or see this region's nucleotide sequence