Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08260

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08255 and SGL_RS08260 are separated by 100 nucleotidesSGL_RS08260 and SGL_RS08265 overlap by 8 nucleotidesSGL_RS08265 and SGL_RS08270 overlap by 22 nucleotides SGL_RS08255: SGL_RS08255 - ABC-F family ATP-binding cassette domain-containing protein, at 1,360,434 to 1,362,158 _RS08255 SGL_RS08260: SGL_RS08260 - L-histidine N(alpha)-methyltransferase, at 1,362,259 to 1,363,272 _RS08260 SGL_RS08265: SGL_RS08265 - hypothetical protein, at 1,363,265 to 1,363,858 _RS08265 SGL_RS08270: SGL_RS08270 - orotidine-5'-phosphate decarboxylase, at 1,363,837 to 1,364,532 _RS08270 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -2 -1 0 1at 1361.279 kb on + strand, within SGL_RS08255at 1361.453 kb on + strand, within SGL_RS08255at 1362.003 kb on + strandat 1362.009 kb on - strandat 1362.134 kb on - strandat 1362.183 kb on + strandat 1362.215 kb on + strandat 1362.223 kb on - strandat 1362.223 kb on - strandat 1362.266 kb on + strandat 1362.316 kb on + strandat 1362.515 kb on - strand, within SGL_RS08260at 1362.658 kb on + strand, within SGL_RS08260at 1363.202 kb on + strandat 1363.227 kb on - strandat 1363.296 kb on + strandat 1363.338 kb on - strand, within SGL_RS08265at 1363.415 kb on + strand, within SGL_RS08265at 1363.418 kb on - strand, within SGL_RS08265at 1363.479 kb on + strand, within SGL_RS08265at 1363.493 kb on - strand, within SGL_RS08265at 1363.680 kb on - strand, within SGL_RS08265at 1363.697 kb on + strand, within SGL_RS08265at 1363.759 kb on - strand, within SGL_RS08265

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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1,361,279 + SGL_RS08255 0.49 -0.3
1,361,453 + SGL_RS08255 0.59 -2.2
1,362,003 + +0.7
1,362,009 - -0.3
1,362,134 - +0.3
1,362,183 + +0.2
1,362,215 + -0.2
1,362,223 - +0.1
1,362,223 - -0.1
1,362,266 + -0.6
1,362,316 + -0.3
1,362,515 - SGL_RS08260 0.25 -0.9
1,362,658 + SGL_RS08260 0.39 -0.7
1,363,202 + -0.0
1,363,227 - -0.6
1,363,296 + +0.0
1,363,338 - SGL_RS08265 0.12 -0.4
1,363,415 + SGL_RS08265 0.25 -1.5
1,363,418 - SGL_RS08265 0.26 -0.9
1,363,479 + SGL_RS08265 0.36 +0.1
1,363,493 - SGL_RS08265 0.38 -0.6
1,363,680 - SGL_RS08265 0.70 -0.4
1,363,697 + SGL_RS08265 0.73 -0.1
1,363,759 - SGL_RS08265 0.83 -1.5

Or see this region's nucleotide sequence