Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07535

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07525 and SGL_RS07530 are separated by 49 nucleotidesSGL_RS07530 and SGL_RS07535 are separated by 129 nucleotidesSGL_RS07535 and SGL_RS07540 overlap by 13 nucleotides SGL_RS07525: SGL_RS07525 - CDGSH iron-sulfur domain-containing protein, at 1,215,167 to 1,215,403 _RS07525 SGL_RS07530: SGL_RS07530 - pirin family protein, at 1,215,453 to 1,216,151 _RS07530 SGL_RS07535: SGL_RS07535 - LysR family transcriptional regulator, at 1,216,281 to 1,217,168 _RS07535 SGL_RS07540: SGL_RS07540 - endonuclease MutS2, at 1,217,156 to 1,219,624 _RS07540 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -2 -1 0 1 2at 1215.336 kb on + strand, within SGL_RS07525at 1215.344 kb on - strand, within SGL_RS07525at 1215.450 kb on + strandat 1215.451 kb on + strandat 1215.458 kb on - strandat 1215.587 kb on + strand, within SGL_RS07530at 1215.634 kb on - strand, within SGL_RS07530at 1215.639 kb on + strand, within SGL_RS07530at 1215.725 kb on - strand, within SGL_RS07530at 1215.785 kb on + strand, within SGL_RS07530at 1215.793 kb on - strand, within SGL_RS07530at 1215.872 kb on - strand, within SGL_RS07530at 1215.876 kb on + strand, within SGL_RS07530at 1215.879 kb on - strand, within SGL_RS07530at 1216.119 kb on + strandat 1216.144 kb on - strandat 1216.362 kb on - strandat 1216.553 kb on - strand, within SGL_RS07535at 1216.567 kb on + strand, within SGL_RS07535at 1216.589 kb on - strand, within SGL_RS07535at 1216.627 kb on - strand, within SGL_RS07535at 1216.783 kb on - strand, within SGL_RS07535at 1216.795 kb on + strand, within SGL_RS07535at 1216.964 kb on - strand, within SGL_RS07535at 1216.964 kb on - strand, within SGL_RS07535at 1216.979 kb on + strand, within SGL_RS07535at 1217.057 kb on + strand, within SGL_RS07535at 1217.074 kb on + strand, within SGL_RS07535at 1217.463 kb on + strand, within SGL_RS07540at 1217.463 kb on + strand, within SGL_RS07540at 1217.574 kb on + strand, within SGL_RS07540at 1217.582 kb on - strand, within SGL_RS07540at 1217.642 kb on - strand, within SGL_RS07540at 1217.728 kb on - strand, within SGL_RS07540at 1217.736 kb on + strand, within SGL_RS07540at 1217.744 kb on + strand, within SGL_RS07540at 1217.949 kb on + strand, within SGL_RS07540at 1217.957 kb on - strand, within SGL_RS07540at 1217.972 kb on + strand, within SGL_RS07540at 1218.011 kb on - strand, within SGL_RS07540at 1218.044 kb on - strand, within SGL_RS07540at 1218.079 kb on - strand, within SGL_RS07540at 1218.103 kb on + strand, within SGL_RS07540

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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1,215,336 + SGL_RS07525 0.71 -0.1
1,215,344 - SGL_RS07525 0.75 -0.4
1,215,450 + -0.6
1,215,451 + +0.2
1,215,458 - +0.6
1,215,587 + SGL_RS07530 0.19 +0.6
1,215,634 - SGL_RS07530 0.26 +0.4
1,215,639 + SGL_RS07530 0.27 -0.4
1,215,725 - SGL_RS07530 0.39 +0.6
1,215,785 + SGL_RS07530 0.47 -0.4
1,215,793 - SGL_RS07530 0.49 +0.1
1,215,872 - SGL_RS07530 0.60 -0.8
1,215,876 + SGL_RS07530 0.61 +0.1
1,215,879 - SGL_RS07530 0.61 -0.5
1,216,119 + -0.3
1,216,144 - -0.2
1,216,362 - -1.1
1,216,553 - SGL_RS07535 0.31 -0.2
1,216,567 + SGL_RS07535 0.32 -2.0
1,216,589 - SGL_RS07535 0.35 -1.2
1,216,627 - SGL_RS07535 0.39 -0.4
1,216,783 - SGL_RS07535 0.57 -1.0
1,216,795 + SGL_RS07535 0.58 +0.4
1,216,964 - SGL_RS07535 0.77 -0.8
1,216,964 - SGL_RS07535 0.77 -0.6
1,216,979 + SGL_RS07535 0.79 -1.3
1,217,057 + SGL_RS07535 0.87 +0.0
1,217,074 + SGL_RS07535 0.89 -1.2
1,217,463 + SGL_RS07540 0.12 +0.3
1,217,463 + SGL_RS07540 0.12 +0.1
1,217,574 + SGL_RS07540 0.17 +2.2
1,217,582 - SGL_RS07540 0.17 +0.2
1,217,642 - SGL_RS07540 0.20 -0.2
1,217,728 - SGL_RS07540 0.23 +0.9
1,217,736 + SGL_RS07540 0.23 -0.1
1,217,744 + SGL_RS07540 0.24 +0.2
1,217,949 + SGL_RS07540 0.32 +0.7
1,217,957 - SGL_RS07540 0.32 -0.0
1,217,972 + SGL_RS07540 0.33 -0.2
1,218,011 - SGL_RS07540 0.35 -0.8
1,218,044 - SGL_RS07540 0.36 +0.8
1,218,079 - SGL_RS07540 0.37 -0.4
1,218,103 + SGL_RS07540 0.38 -0.3

Or see this region's nucleotide sequence