Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07050

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07045 and SGL_RS07050 are separated by 120 nucleotidesSGL_RS07050 and SGL_RS07055 are separated by 73 nucleotides SGL_RS07045: SGL_RS07045 - TIGR02652 family protein, at 1,105,030 to 1,105,545 _RS07045 SGL_RS07050: SGL_RS07050 - polyphosphate:AMP phosphotransferase, at 1,105,666 to 1,107,168 _RS07050 SGL_RS07055: SGL_RS07055 - biotin synthase BioB, at 1,107,242 to 1,108,330 _RS07055 Position (kb) 1105 1106 1107 1108Strain fitness (log2 ratio) -2 -1 0 1at 1104.860 kb on + strandat 1105.129 kb on - strand, within SGL_RS07045at 1105.151 kb on + strand, within SGL_RS07045at 1105.164 kb on + strand, within SGL_RS07045at 1105.182 kb on - strand, within SGL_RS07045at 1105.220 kb on + strand, within SGL_RS07045at 1105.275 kb on + strand, within SGL_RS07045at 1105.280 kb on + strand, within SGL_RS07045at 1105.288 kb on - strand, within SGL_RS07045at 1105.291 kb on + strand, within SGL_RS07045at 1105.291 kb on + strand, within SGL_RS07045at 1105.454 kb on - strand, within SGL_RS07045at 1105.462 kb on + strand, within SGL_RS07045at 1105.633 kb on - strandat 1105.661 kb on + strandat 1105.674 kb on - strandat 1105.684 kb on - strandat 1105.751 kb on + strandat 1105.751 kb on + strandat 1105.751 kb on + strandat 1105.751 kb on + strandat 1105.759 kb on - strandat 1105.764 kb on - strandat 1106.091 kb on - strand, within SGL_RS07050at 1106.292 kb on + strand, within SGL_RS07050at 1106.319 kb on - strand, within SGL_RS07050at 1106.329 kb on + strand, within SGL_RS07050at 1106.362 kb on + strand, within SGL_RS07050at 1106.633 kb on + strand, within SGL_RS07050at 1106.664 kb on - strand, within SGL_RS07050at 1106.689 kb on + strand, within SGL_RS07050at 1106.828 kb on - strand, within SGL_RS07050at 1106.873 kb on + strand, within SGL_RS07050at 1106.914 kb on - strand, within SGL_RS07050at 1106.935 kb on - strand, within SGL_RS07050at 1106.936 kb on - strand, within SGL_RS07050at 1106.997 kb on + strand, within SGL_RS07050at 1107.007 kb on + strand, within SGL_RS07050at 1107.016 kb on - strand, within SGL_RS07050at 1107.065 kb on + strandat 1107.163 kb on + strandat 1107.171 kb on - strandat 1107.181 kb on + strandat 1107.181 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
remove
1,104,860 + +0.1
1,105,129 - SGL_RS07045 0.19 +1.2
1,105,151 + SGL_RS07045 0.23 +0.6
1,105,164 + SGL_RS07045 0.26 -0.0
1,105,182 - SGL_RS07045 0.29 +0.1
1,105,220 + SGL_RS07045 0.37 -0.1
1,105,275 + SGL_RS07045 0.47 -0.4
1,105,280 + SGL_RS07045 0.48 +1.2
1,105,288 - SGL_RS07045 0.50 -0.6
1,105,291 + SGL_RS07045 0.51 -0.5
1,105,291 + SGL_RS07045 0.51 -0.5
1,105,454 - SGL_RS07045 0.82 -0.0
1,105,462 + SGL_RS07045 0.84 -0.1
1,105,633 - -0.5
1,105,661 + -0.4
1,105,674 - -0.5
1,105,684 - -0.8
1,105,751 + -0.2
1,105,751 + -0.6
1,105,751 + +1.1
1,105,751 + -0.9
1,105,759 - -1.4
1,105,764 - -1.2
1,106,091 - SGL_RS07050 0.28 -0.7
1,106,292 + SGL_RS07050 0.42 -0.7
1,106,319 - SGL_RS07050 0.43 -0.9
1,106,329 + SGL_RS07050 0.44 -0.6
1,106,362 + SGL_RS07050 0.46 -1.9
1,106,633 + SGL_RS07050 0.64 -0.4
1,106,664 - SGL_RS07050 0.66 +1.5
1,106,689 + SGL_RS07050 0.68 -0.1
1,106,828 - SGL_RS07050 0.77 -2.1
1,106,873 + SGL_RS07050 0.80 +0.5
1,106,914 - SGL_RS07050 0.83 -1.6
1,106,935 - SGL_RS07050 0.84 -0.7
1,106,936 - SGL_RS07050 0.84 -0.8
1,106,997 + SGL_RS07050 0.89 -0.5
1,107,007 + SGL_RS07050 0.89 -1.0
1,107,016 - SGL_RS07050 0.90 -0.8
1,107,065 + +0.4
1,107,163 + -0.2
1,107,171 - -0.5
1,107,181 + +0.4
1,107,181 + -0.2

Or see this region's nucleotide sequence