Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06245

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06240 and SGL_RS06245 are separated by 55 nucleotidesSGL_RS06245 and SGL_RS06250 are separated by 262 nucleotides SGL_RS06240: SGL_RS06240 - alpha/beta fold hydrolase, at 927,755 to 928,750 _RS06240 SGL_RS06245: SGL_RS06245 - late competence development ComFB family protein, at 928,806 to 929,885 _RS06245 SGL_RS06250: SGL_RS06250 - hypothetical protein, at 930,148 to 930,843 _RS06250 Position (kb) 928 929 930Strain fitness (log2 ratio) -1 0 1at 927.879 kb on + strand, within SGL_RS06240at 927.905 kb on + strand, within SGL_RS06240at 927.924 kb on + strand, within SGL_RS06240at 928.046 kb on + strand, within SGL_RS06240at 928.161 kb on + strand, within SGL_RS06240at 928.296 kb on - strand, within SGL_RS06240at 928.385 kb on - strand, within SGL_RS06240at 928.385 kb on - strand, within SGL_RS06240at 928.480 kb on + strand, within SGL_RS06240at 929.012 kb on + strand, within SGL_RS06245at 929.404 kb on - strand, within SGL_RS06245at 930.047 kb on - strandat 930.179 kb on - strandat 930.181 kb on - strandat 930.217 kb on + strandat 930.223 kb on + strand, within SGL_RS06250at 930.225 kb on - strand, within SGL_RS06250at 930.231 kb on - strand, within SGL_RS06250at 930.453 kb on - strand, within SGL_RS06250at 930.504 kb on - strand, within SGL_RS06250at 930.563 kb on - strand, within SGL_RS06250at 930.763 kb on + strand, within SGL_RS06250

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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927,879 + SGL_RS06240 0.12 -0.2
927,905 + SGL_RS06240 0.15 -0.2
927,924 + SGL_RS06240 0.17 +0.6
928,046 + SGL_RS06240 0.29 +0.3
928,161 + SGL_RS06240 0.41 +0.8
928,296 - SGL_RS06240 0.54 +0.8
928,385 - SGL_RS06240 0.63 +0.1
928,385 - SGL_RS06240 0.63 -0.0
928,480 + SGL_RS06240 0.73 -0.0
929,012 + SGL_RS06245 0.19 -0.8
929,404 - SGL_RS06245 0.55 -0.8
930,047 - +0.9
930,179 - -1.4
930,181 - -0.7
930,217 + -0.6
930,223 + SGL_RS06250 0.11 -0.2
930,225 - SGL_RS06250 0.11 +0.4
930,231 - SGL_RS06250 0.12 -1.6
930,453 - SGL_RS06250 0.44 -0.6
930,504 - SGL_RS06250 0.51 -0.0
930,563 - SGL_RS06250 0.60 +0.4
930,763 + SGL_RS06250 0.88 -0.1

Or see this region's nucleotide sequence