Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04280

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04275 and SGL_RS04280 are separated by 104 nucleotidesSGL_RS04280 and SGL_RS04285 are separated by 213 nucleotides SGL_RS04275: SGL_RS04275 - magnesium chelatase subunit H, at 508,515 to 512,510 _RS04275 SGL_RS04280: SGL_RS04280 - ATP-dependent endonuclease, at 512,615 to 514,633 _RS04280 SGL_RS04285: SGL_RS04285 - DUF2157 domain-containing protein, at 514,847 to 515,926 _RS04285 Position (kb) 512 513 514 515Strain fitness (log2 ratio) -1 0 1at 512.550 kb on - strandat 513.166 kb on - strand, within SGL_RS04280at 513.760 kb on + strand, within SGL_RS04280at 514.320 kb on - strand, within SGL_RS04280at 514.729 kb on - strandat 515.048 kb on - strand, within SGL_RS04285at 515.152 kb on - strand, within SGL_RS04285at 515.193 kb on - strand, within SGL_RS04285at 515.200 kb on + strand, within SGL_RS04285at 515.279 kb on + strand, within SGL_RS04285at 515.322 kb on + strand, within SGL_RS04285at 515.581 kb on - strand, within SGL_RS04285

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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512,550 - -0.1
513,166 - SGL_RS04280 0.27 -0.9
513,760 + SGL_RS04280 0.57 -0.9
514,320 - SGL_RS04280 0.84 -0.4
514,729 - -0.9
515,048 - SGL_RS04285 0.19 -0.4
515,152 - SGL_RS04285 0.28 +1.4
515,193 - SGL_RS04285 0.32 +0.9
515,200 + SGL_RS04285 0.33 +0.1
515,279 + SGL_RS04285 0.40 -0.5
515,322 + SGL_RS04285 0.44 -0.2
515,581 - SGL_RS04285 0.68 -0.3

Or see this region's nucleotide sequence