Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19440

Experiment: NaNO3 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07195 and SGL_RS19440 are separated by 26 nucleotidesSGL_RS19440 and SGL_RS07200 are separated by 320 nucleotides SGL_RS07195: SGL_RS07195 - LptF/LptG family permease, at 1,143,053 to 1,144,231 _RS07195 SGL_RS19440: SGL_RS19440 - hypothetical protein, at 1,144,258 to 1,144,407 _RS19440 SGL_RS07200: SGL_RS07200 - LCP family protein, at 1,144,728 to 1,146,173 _RS07200 Position (kb) 1144 1145Strain fitness (log2 ratio) -3 -2 -1 0 1at 1144.279 kb on + strand, within SGL_RS19440at 1144.327 kb on - strand, within SGL_RS19440at 1144.506 kb on + strandat 1145.024 kb on - strand, within SGL_RS07200at 1145.069 kb on - strand, within SGL_RS07200at 1145.070 kb on - strand, within SGL_RS07200at 1145.071 kb on + strand, within SGL_RS07200at 1145.079 kb on - strand, within SGL_RS07200at 1145.301 kb on + strand, within SGL_RS07200at 1145.305 kb on - strand, within SGL_RS07200

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO3 10 mM as N source, buffered with 20 mM TES pH8
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1,144,279 + SGL_RS19440 0.14 -0.8
1,144,327 - SGL_RS19440 0.46 -1.0
1,144,506 + -0.0
1,145,024 - SGL_RS07200 0.20 -3.2
1,145,069 - SGL_RS07200 0.24 -1.2
1,145,070 - SGL_RS07200 0.24 -1.9
1,145,071 + SGL_RS07200 0.24 -3.0
1,145,079 - SGL_RS07200 0.24 -2.7
1,145,301 + SGL_RS07200 0.40 -1.8
1,145,305 - SGL_RS07200 0.40 -2.8

Or see this region's nucleotide sequence