Experiment: NaNO3 10 mM as N source, buffered with 20 mM TES pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17645 and SGL_RS17650 are separated by 165 nucleotides SGL_RS17650 and SGL_RS17655 are separated by 538 nucleotides
SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667
_RS17645
SGL_RS17650: SGL_RS17650 - hypothetical protein, at 3,414,833 to 3,415,525
_RS17650
SGL_RS17655: SGL_RS17655 - ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein, at 3,416,064 to 3,416,924
_RS17655
Position (kb)
3414
3415
3416 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3413.916 kb on + strand, within SGL_RS17645 at 3414.052 kb on - strand, within SGL_RS17645 at 3414.075 kb on + strand, within SGL_RS17645 at 3414.485 kb on + strand, within SGL_RS17645 at 3414.631 kb on - strand at 3414.662 kb on + strand at 3414.664 kb on + strand at 3414.797 kb on + strand at 3414.803 kb on - strand at 3414.814 kb on + strand at 3414.838 kb on + strand at 3414.902 kb on + strand at 3414.910 kb on - strand, within SGL_RS17650 at 3415.045 kb on + strand, within SGL_RS17650 at 3415.093 kb on + strand, within SGL_RS17650 at 3415.257 kb on + strand, within SGL_RS17650 at 3415.424 kb on + strand, within SGL_RS17650 at 3416.017 kb on + strand at 3416.017 kb on + strand at 3416.017 kb on + strand at 3416.017 kb on + strand at 3416.191 kb on + strand, within SGL_RS17655 at 3416.191 kb on + strand, within SGL_RS17655 at 3416.199 kb on - strand, within SGL_RS17655 at 3416.199 kb on - strand, within SGL_RS17655 at 3416.264 kb on + strand, within SGL_RS17655 at 3416.454 kb on + strand, within SGL_RS17655 at 3416.474 kb on - strand, within SGL_RS17655
Per-strain Table
Position Strand Gene LocusTag Fraction NaNO3 10 mM as N source, buffered with 20 mM TES pH8 remove 3,413,916 + SGL_RS17645 0.53 -0.9 3,414,052 - SGL_RS17645 0.61 +0.1 3,414,075 + SGL_RS17645 0.63 +2.0 3,414,485 + SGL_RS17645 0.88 -0.1 3,414,631 - -0.1 3,414,662 + -2.1 3,414,664 + -0.3 3,414,797 + +0.0 3,414,803 - -0.2 3,414,814 + +0.2 3,414,838 + +0.2 3,414,902 + -1.3 3,414,910 - SGL_RS17650 0.11 -1.1 3,415,045 + SGL_RS17650 0.31 -0.3 3,415,093 + SGL_RS17650 0.38 -2.1 3,415,257 + SGL_RS17650 0.61 -1.3 3,415,424 + SGL_RS17650 0.85 -1.7 3,416,017 + -0.1 3,416,017 + -0.1 3,416,017 + -0.4 3,416,017 + -0.1 3,416,191 + SGL_RS17655 0.15 +0.2 3,416,191 + SGL_RS17655 0.15 +0.2 3,416,199 - SGL_RS17655 0.16 +0.1 3,416,199 - SGL_RS17655 0.16 +0.1 3,416,264 + SGL_RS17655 0.23 -0.3 3,416,454 + SGL_RS17655 0.45 +0.3 3,416,474 - SGL_RS17655 0.48 -0.2
Or see this region's nucleotide sequence