Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11445

Experiment: NaNO3 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11440 and SGL_RS11445 are separated by 79 nucleotidesSGL_RS11445 and SGL_RS11450 are separated by 136 nucleotides SGL_RS11440: SGL_RS11440 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,024,993 to 2,026,147 _RS11440 SGL_RS11445: SGL_RS11445 - DUF1816 domain-containing protein, at 2,026,227 to 2,026,538 _RS11445 SGL_RS11450: SGL_RS11450 - cysteine--tRNA ligase, at 2,026,675 to 2,028,126 _RS11450 Position (kb) 2026 2027Strain fitness (log2 ratio) -2 -1 0 1at 2025.253 kb on - strand, within SGL_RS11440at 2025.395 kb on + strand, within SGL_RS11440at 2025.432 kb on + strand, within SGL_RS11440at 2025.493 kb on + strand, within SGL_RS11440at 2025.567 kb on - strand, within SGL_RS11440at 2025.578 kb on + strand, within SGL_RS11440at 2025.724 kb on + strand, within SGL_RS11440at 2025.739 kb on - strand, within SGL_RS11440at 2025.770 kb on - strand, within SGL_RS11440at 2025.884 kb on + strand, within SGL_RS11440at 2025.904 kb on + strand, within SGL_RS11440at 2025.926 kb on + strand, within SGL_RS11440at 2025.934 kb on - strand, within SGL_RS11440at 2026.031 kb on - strand, within SGL_RS11440at 2026.100 kb on + strandat 2026.113 kb on - strandat 2026.393 kb on - strand, within SGL_RS11445at 2026.472 kb on + strand, within SGL_RS11445

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO3 10 mM as N source, buffered with 20 mM TES pH8
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2,025,253 - SGL_RS11440 0.23 +0.0
2,025,395 + SGL_RS11440 0.35 -0.9
2,025,432 + SGL_RS11440 0.38 -0.0
2,025,493 + SGL_RS11440 0.43 -0.3
2,025,567 - SGL_RS11440 0.50 -0.2
2,025,578 + SGL_RS11440 0.51 -0.0
2,025,724 + SGL_RS11440 0.63 -1.0
2,025,739 - SGL_RS11440 0.65 -0.3
2,025,770 - SGL_RS11440 0.67 +0.1
2,025,884 + SGL_RS11440 0.77 -0.7
2,025,904 + SGL_RS11440 0.79 -0.7
2,025,926 + SGL_RS11440 0.81 -0.1
2,025,934 - SGL_RS11440 0.81 +0.0
2,026,031 - SGL_RS11440 0.90 -0.3
2,026,100 + -0.4
2,026,113 - +0.0
2,026,393 - SGL_RS11445 0.53 -0.8
2,026,472 + SGL_RS11445 0.79 -2.3

Or see this region's nucleotide sequence