Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11325

Experiment: NaNO3 10 mM as N source, buffered with 20 mM TES pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11315 and SGL_RS11320 are separated by 46 nucleotidesSGL_RS11320 and SGL_RS11325 overlap by 4 nucleotidesSGL_RS11325 and SGL_RS11330 are separated by 160 nucleotides SGL_RS11315: SGL_RS11315 - Mur ligase family protein, at 2,000,815 to 2,002,194 _RS11315 SGL_RS11320: SGL_RS11320 - precorrin-8X methylmutase, at 2,002,241 to 2,002,894 _RS11320 SGL_RS11325: SGL_RS11325 - pitrilysin family protein, at 2,002,891 to 2,004,465 _RS11325 SGL_RS11330: SGL_RS11330 - 9,9'-di-cis-zeta-carotene desaturase, at 2,004,626 to 2,006,095 _RS11330 Position (kb) 2002 2003 2004 2005Strain fitness (log2 ratio) -2 -1 0 1at 2002.208 kb on + strandat 2002.209 kb on + strandat 2002.603 kb on - strand, within SGL_RS11320at 2002.649 kb on + strand, within SGL_RS11320at 2002.783 kb on + strand, within SGL_RS11320at 2002.851 kb on - strandat 2003.216 kb on - strand, within SGL_RS11325at 2003.501 kb on + strand, within SGL_RS11325at 2003.525 kb on + strand, within SGL_RS11325at 2003.787 kb on - strand, within SGL_RS11325at 2003.837 kb on + strand, within SGL_RS11325at 2003.951 kb on - strand, within SGL_RS11325at 2003.971 kb on - strand, within SGL_RS11325at 2003.971 kb on - strand, within SGL_RS11325at 2004.072 kb on - strand, within SGL_RS11325at 2004.196 kb on - strand, within SGL_RS11325at 2004.220 kb on - strand, within SGL_RS11325at 2004.699 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NaNO3 10 mM as N source, buffered with 20 mM TES pH8
remove
2,002,208 + +0.0
2,002,209 + -0.2
2,002,603 - SGL_RS11320 0.55 -0.4
2,002,649 + SGL_RS11320 0.62 +0.2
2,002,783 + SGL_RS11320 0.83 -2.0
2,002,851 - -0.6
2,003,216 - SGL_RS11325 0.21 -0.6
2,003,501 + SGL_RS11325 0.39 +0.2
2,003,525 + SGL_RS11325 0.40 -0.4
2,003,787 - SGL_RS11325 0.57 -0.7
2,003,837 + SGL_RS11325 0.60 -2.1
2,003,951 - SGL_RS11325 0.67 -0.9
2,003,971 - SGL_RS11325 0.69 -0.6
2,003,971 - SGL_RS11325 0.69 +0.1
2,004,072 - SGL_RS11325 0.75 -1.9
2,004,196 - SGL_RS11325 0.83 -0.6
2,004,220 - SGL_RS11325 0.84 -0.1
2,004,699 + -0.8

Or see this region's nucleotide sequence