Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00015

Experiment: NaNO3 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00010 and SGL_RS00015 are separated by 118 nucleotidesSGL_RS00015 and SGL_RS20055 overlap by 26 nucleotidesSGL_RS20055 and SGL_RS00020 are separated by 827 nucleotides SGL_RS00010: SGL_RS00010 - hypothetical protein, at 574 to 1,017 _RS00010 SGL_RS00015: SGL_RS00015 - DUF5615 family PIN-like protein, at 1,136 to 1,540 _RS00015 SGL_RS20055: SGL_RS20055 - DUF433 domain-containing protein, at 1,515 to 1,700 _RS20055 SGL_RS00020: SGL_RS00020 - FG-GAP-like repeat-containing protein, at 2,528 to 13,921 _RS00020 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.300 kb on - strandat 0.431 kb on - strandat 0.754 kb on + strand, within SGL_RS00010at 0.802 kb on - strand, within SGL_RS00010at 0.825 kb on - strand, within SGL_RS00010at 0.857 kb on + strand, within SGL_RS00010at 0.898 kb on - strand, within SGL_RS00010at 0.905 kb on + strand, within SGL_RS00010at 1.047 kb on + strandat 1.440 kb on - strand, within SGL_RS00015at 1.496 kb on - strand, within SGL_RS00015at 1.854 kb on + strandat 1.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO3 10 mM as N source, buffered with 20 mM TES pH8
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300 - +0.2
431 - -0.2
754 + SGL_RS00010 0.41 +0.2
802 - SGL_RS00010 0.51 +0.1
825 - SGL_RS00010 0.57 -0.1
857 + SGL_RS00010 0.64 +0.0
898 - SGL_RS00010 0.73 -0.1
905 + SGL_RS00010 0.75 -0.0
1,047 + -0.2
1,440 - SGL_RS00015 0.75 -1.8
1,496 - SGL_RS00015 0.89 -0.0
1,854 + +0.1
1,905 - +0.3

Or see this region's nucleotide sequence