Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12280

Experiment: growth in full media supplemented with 3 .M Cl2Co but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12270 and SGL_RS12275 are separated by 349 nucleotidesSGL_RS12275 and SGL_RS12280 are separated by 79 nucleotidesSGL_RS12280 and SGL_RS12285 are separated by 114 nucleotidesSGL_RS12285 and SGL_RS12290 overlap by 8 nucleotides SGL_RS12270: SGL_RS12270 - peptide chain release factor 2, at 2,214,685 to 2,215,801 _RS12270 SGL_RS12275: SGL_RS12275 - hypothetical protein, at 2,216,151 to 2,216,396 _RS12275 SGL_RS12280: SGL_RS12280 - chloride channel protein, at 2,216,476 to 2,219,175 _RS12280 SGL_RS12285: SGL_RS12285 - hypothetical protein, at 2,219,290 to 2,219,793 _RS12285 SGL_RS12290: SGL_RS12290 - DUF58 domain-containing protein, at 2,219,786 to 2,220,961 _RS12290 Position (kb) 2216 2217 2218 2219 2220Strain fitness (log2 ratio) -1 0 1at 2215.855 kb on + strandat 2215.873 kb on - strandat 2216.232 kb on - strand, within SGL_RS12275at 2216.238 kb on + strand, within SGL_RS12275at 2216.538 kb on + strandat 2216.944 kb on - strand, within SGL_RS12280at 2216.990 kb on - strand, within SGL_RS12280at 2217.173 kb on + strand, within SGL_RS12280at 2217.411 kb on - strand, within SGL_RS12280at 2217.599 kb on - strand, within SGL_RS12280at 2217.604 kb on - strand, within SGL_RS12280at 2217.614 kb on - strand, within SGL_RS12280at 2217.646 kb on + strand, within SGL_RS12280at 2217.661 kb on + strand, within SGL_RS12280at 2217.762 kb on + strand, within SGL_RS12280at 2217.903 kb on + strand, within SGL_RS12280at 2218.114 kb on + strand, within SGL_RS12280at 2218.117 kb on - strand, within SGL_RS12280at 2218.122 kb on - strand, within SGL_RS12280at 2218.185 kb on - strand, within SGL_RS12280at 2218.315 kb on + strand, within SGL_RS12280at 2218.324 kb on + strand, within SGL_RS12280at 2218.386 kb on + strand, within SGL_RS12280at 2218.389 kb on - strand, within SGL_RS12280at 2218.544 kb on - strand, within SGL_RS12280at 2218.582 kb on + strand, within SGL_RS12280at 2218.588 kb on - strand, within SGL_RS12280at 2218.589 kb on - strand, within SGL_RS12280at 2218.658 kb on - strand, within SGL_RS12280at 2218.732 kb on + strand, within SGL_RS12280at 2218.747 kb on + strand, within SGL_RS12280at 2218.797 kb on - strand, within SGL_RS12280at 2218.803 kb on - strand, within SGL_RS12280at 2218.927 kb on - strandat 2219.010 kb on + strandat 2220.122 kb on + strand, within SGL_RS12290at 2220.133 kb on + strand, within SGL_RS12290at 2220.133 kb on + strand, within SGL_RS12290at 2220.133 kb on + strand, within SGL_RS12290

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 3 .M Cl2Co but diluted to prevent light attenuation
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2,215,855 + +0.1
2,215,873 - -0.6
2,216,232 - SGL_RS12275 0.33 -0.0
2,216,238 + SGL_RS12275 0.35 +0.1
2,216,538 + -0.2
2,216,944 - SGL_RS12280 0.17 +0.2
2,216,990 - SGL_RS12280 0.19 -0.2
2,217,173 + SGL_RS12280 0.26 +0.6
2,217,411 - SGL_RS12280 0.35 +0.2
2,217,599 - SGL_RS12280 0.42 -0.2
2,217,604 - SGL_RS12280 0.42 +0.5
2,217,614 - SGL_RS12280 0.42 +0.7
2,217,646 + SGL_RS12280 0.43 -0.3
2,217,661 + SGL_RS12280 0.44 -0.1
2,217,762 + SGL_RS12280 0.48 -0.6
2,217,903 + SGL_RS12280 0.53 +0.6
2,218,114 + SGL_RS12280 0.61 -0.1
2,218,117 - SGL_RS12280 0.61 +0.2
2,218,122 - SGL_RS12280 0.61 +0.3
2,218,185 - SGL_RS12280 0.63 +0.4
2,218,315 + SGL_RS12280 0.68 +0.9
2,218,324 + SGL_RS12280 0.68 +0.0
2,218,386 + SGL_RS12280 0.71 +0.3
2,218,389 - SGL_RS12280 0.71 -0.3
2,218,544 - SGL_RS12280 0.77 -0.4
2,218,582 + SGL_RS12280 0.78 +0.1
2,218,588 - SGL_RS12280 0.78 -0.3
2,218,589 - SGL_RS12280 0.78 -0.2
2,218,658 - SGL_RS12280 0.81 +0.5
2,218,732 + SGL_RS12280 0.84 +0.0
2,218,747 + SGL_RS12280 0.84 +1.5
2,218,797 - SGL_RS12280 0.86 +0.4
2,218,803 - SGL_RS12280 0.86 +0.0
2,218,927 - +0.2
2,219,010 + -0.5
2,220,122 + SGL_RS12290 0.29 -0.0
2,220,133 + SGL_RS12290 0.30 -0.2
2,220,133 + SGL_RS12290 0.30 +0.5
2,220,133 + SGL_RS12290 0.30 -0.2

Or see this region's nucleotide sequence