Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19695

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01295 and SGL_RS01300 are separated by 43 nucleotidesSGL_RS01300 and SGL_RS19695 are separated by 366 nucleotidesSGL_RS19695 and SGL_RS19700 are separated by 25 nucleotidesSGL_RS19700 and SGL_RS19705 are separated by 162 nucleotides SGL_RS01295: SGL_RS01295 - nitronate monooxygenase, at 29,006 to 30,040 _RS01295 SGL_RS01300: SGL_RS01300 - hypothetical protein, at 30,084 to 30,587 _RS01300 SGL_RS19695: SGL_RS19695 - GNAT family N-acetyltransferase, at 30,954 to 31,376 _RS19695 SGL_RS19700: SGL_RS19700 - GNAT family N-acetyltransferase, at 31,402 to 31,830 _RS19700 SGL_RS19705: SGL_RS19705 - transglutaminase family protein, at 31,993 to 32,598 _RS19705 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.983 kb on - strandat 30.063 kb on + strandat 30.080 kb on + strandat 30.088 kb on - strandat 30.090 kb on + strandat 30.090 kb on - strandat 30.136 kb on + strand, within SGL_RS01300at 30.217 kb on - strand, within SGL_RS01300at 30.234 kb on + strand, within SGL_RS01300at 30.265 kb on + strand, within SGL_RS01300at 30.291 kb on - strand, within SGL_RS01300at 30.317 kb on + strand, within SGL_RS01300at 30.346 kb on + strand, within SGL_RS01300at 30.402 kb on - strand, within SGL_RS01300at 30.460 kb on - strand, within SGL_RS01300at 30.460 kb on - strand, within SGL_RS01300at 30.470 kb on - strand, within SGL_RS01300at 30.470 kb on - strand, within SGL_RS01300at 30.480 kb on - strand, within SGL_RS01300at 30.496 kb on - strand, within SGL_RS01300at 30.602 kb on + strandat 30.736 kb on - strandat 30.736 kb on - strandat 30.772 kb on - strandat 30.814 kb on + strandat 30.824 kb on + strandat 30.824 kb on + strandat 30.892 kb on + strandat 30.945 kb on - strandat 30.945 kb on - strandat 30.945 kb on - strandat 30.950 kb on - strandat 31.029 kb on + strand, within SGL_RS19695at 31.080 kb on + strand, within SGL_RS19695at 31.154 kb on + strand, within SGL_RS19695at 31.162 kb on + strand, within SGL_RS19695at 31.164 kb on + strand, within SGL_RS19695at 31.234 kb on - strand, within SGL_RS19695at 31.234 kb on - strand, within SGL_RS19695at 31.250 kb on + strand, within SGL_RS19695at 31.278 kb on + strand, within SGL_RS19695at 31.399 kb on + strandat 31.399 kb on + strandat 31.415 kb on - strandat 31.416 kb on - strandat 31.479 kb on + strand, within SGL_RS19700at 31.484 kb on + strand, within SGL_RS19700at 31.492 kb on - strand, within SGL_RS19700at 31.504 kb on + strand, within SGL_RS19700at 31.629 kb on + strand, within SGL_RS19700at 31.636 kb on + strand, within SGL_RS19700at 31.667 kb on - strand, within SGL_RS19700at 31.793 kb on + strandat 31.861 kb on + strandat 31.863 kb on - strandat 31.895 kb on + strandat 31.914 kb on - strandat 31.997 kb on + strandat 31.997 kb on + strandat 32.058 kb on - strand, within SGL_RS19705at 32.203 kb on + strand, within SGL_RS19705at 32.236 kb on + strand, within SGL_RS19705at 32.288 kb on + strand, within SGL_RS19705at 32.309 kb on + strand, within SGL_RS19705at 32.309 kb on - strand, within SGL_RS19705at 32.317 kb on - strand, within SGL_RS19705at 32.325 kb on + strand, within SGL_RS19705at 32.325 kb on + strand, within SGL_RS19705at 32.346 kb on - strand, within SGL_RS19705

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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29,983 - -1.1
30,063 + -0.1
30,080 + -0.1
30,088 - -0.9
30,090 + +0.3
30,090 - -0.5
30,136 + SGL_RS01300 0.10 -0.3
30,217 - SGL_RS01300 0.26 -0.4
30,234 + SGL_RS01300 0.30 +0.3
30,265 + SGL_RS01300 0.36 -0.0
30,291 - SGL_RS01300 0.41 -0.4
30,317 + SGL_RS01300 0.46 +0.7
30,346 + SGL_RS01300 0.52 +0.4
30,402 - SGL_RS01300 0.63 -0.8
30,460 - SGL_RS01300 0.75 -0.1
30,460 - SGL_RS01300 0.75 -0.4
30,470 - SGL_RS01300 0.77 +0.1
30,470 - SGL_RS01300 0.77 -0.1
30,480 - SGL_RS01300 0.79 +0.6
30,496 - SGL_RS01300 0.82 -0.0
30,602 + -0.1
30,736 - +0.9
30,736 - -0.2
30,772 - +0.2
30,814 + -0.0
30,824 + -2.5
30,824 + -0.4
30,892 + +1.6
30,945 - +0.6
30,945 - -0.6
30,945 - -0.4
30,950 - +0.7
31,029 + SGL_RS19695 0.18 +0.6
31,080 + SGL_RS19695 0.30 +0.1
31,154 + SGL_RS19695 0.47 +0.1
31,162 + SGL_RS19695 0.49 +0.2
31,164 + SGL_RS19695 0.50 +0.6
31,234 - SGL_RS19695 0.66 +1.7
31,234 - SGL_RS19695 0.66 +0.6
31,250 + SGL_RS19695 0.70 +0.3
31,278 + SGL_RS19695 0.77 +0.1
31,399 + +0.1
31,399 + +0.5
31,415 - +0.6
31,416 - +0.7
31,479 + SGL_RS19700 0.18 -0.4
31,484 + SGL_RS19700 0.19 -0.9
31,492 - SGL_RS19700 0.21 +0.2
31,504 + SGL_RS19700 0.24 -0.1
31,629 + SGL_RS19700 0.53 -0.1
31,636 + SGL_RS19700 0.55 +0.7
31,667 - SGL_RS19700 0.62 -0.3
31,793 + +0.0
31,861 + +0.5
31,863 - +0.2
31,895 + +0.4
31,914 - -0.5
31,997 + -0.8
31,997 + -0.6
32,058 - SGL_RS19705 0.11 -0.9
32,203 + SGL_RS19705 0.35 -0.3
32,236 + SGL_RS19705 0.40 +0.5
32,288 + SGL_RS19705 0.49 +0.4
32,309 + SGL_RS19705 0.52 +0.2
32,309 - SGL_RS19705 0.52 +0.5
32,317 - SGL_RS19705 0.53 +0.1
32,325 + SGL_RS19705 0.55 -0.7
32,325 + SGL_RS19705 0.55 -0.3
32,346 - SGL_RS19705 0.58 +0.3

Or see this region's nucleotide sequence