Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19635

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14445 and SGL_RS19635 are separated by 474 nucleotidesSGL_RS19635 and SGL_RS14450 are separated by 349 nucleotidesSGL_RS14450 and SGL_RS14455 are separated by 145 nucleotides SGL_RS14445: SGL_RS14445 - hypothetical protein, at 2,694,261 to 2,695,145 _RS14445 SGL_RS19635: SGL_RS19635 - hypothetical protein, at 2,695,620 to 2,695,775 _RS19635 SGL_RS14450: SGL_RS14450 - hypothetical protein, at 2,696,125 to 2,696,403 _RS14450 SGL_RS14455: SGL_RS14455 - hypothetical protein, at 2,696,549 to 2,696,836 _RS14455 Position (kb) 2695 2696Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2694.628 kb on + strand, within SGL_RS14445at 2694.678 kb on + strand, within SGL_RS14445at 2694.678 kb on + strand, within SGL_RS14445at 2694.686 kb on - strand, within SGL_RS14445at 2694.892 kb on + strand, within SGL_RS14445at 2695.003 kb on - strand, within SGL_RS14445at 2695.183 kb on - strandat 2695.315 kb on - strandat 2695.397 kb on - strandat 2695.429 kb on - strandat 2695.704 kb on - strand, within SGL_RS19635at 2696.049 kb on + strandat 2696.091 kb on - strandat 2696.671 kb on + strand, within SGL_RS14455at 2696.675 kb on + strand, within SGL_RS14455at 2696.699 kb on + strand, within SGL_RS14455

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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2,694,628 + SGL_RS14445 0.41 -1.4
2,694,678 + SGL_RS14445 0.47 -1.4
2,694,678 + SGL_RS14445 0.47 -1.1
2,694,686 - SGL_RS14445 0.48 -0.6
2,694,892 + SGL_RS14445 0.71 -2.2
2,695,003 - SGL_RS14445 0.84 -1.1
2,695,183 - -4.0
2,695,315 - -0.3
2,695,397 - -1.2
2,695,429 - +0.5
2,695,704 - SGL_RS19635 0.54 +0.6
2,696,049 + +0.2
2,696,091 - -0.0
2,696,671 + SGL_RS14455 0.42 -0.4
2,696,675 + SGL_RS14455 0.44 +0.2
2,696,699 + SGL_RS14455 0.52 -0.2

Or see this region's nucleotide sequence