Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19375

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00770 and SGL_RS00775 are separated by 29 nucleotidesSGL_RS00775 and SGL_RS00780 overlap by 4 nucleotidesSGL_RS00780 and SGL_RS19375 are separated by 52 nucleotidesSGL_RS19375 and SGL_RS19380 are separated by 45 nucleotidesSGL_RS19380 and SGL_RS00785 are separated by 31 nucleotidesSGL_RS00785 and SGL_RS00790 are separated by 191 nucleotides SGL_RS00770: SGL_RS00770 - DUF86 domain-containing protein, at 30,352 to 30,669 _RS00770 SGL_RS00775: SGL_RS00775 - DUF5615 family PIN-like protein, at 30,699 to 31,040 _RS00775 SGL_RS00780: SGL_RS00780 - DUF433 domain-containing protein, at 31,037 to 31,369 _RS00780 SGL_RS19375: SGL_RS19375 - hypothetical protein, at 31,422 to 31,595 _RS19375 SGL_RS19380: SGL_RS19380 - hypothetical protein, at 31,641 to 31,790 _RS19380 SGL_RS00785: SGL_RS00785 - hypothetical protein, at 31,822 to 32,097 _RS00785 SGL_RS00790: SGL_RS00790 - hypothetical protein, at 32,289 to 32,483 _RS00790 Position (kb) 31 32Strain fitness (log2 ratio) -1 0 1at 30.842 kb on - strand, within SGL_RS00775at 30.979 kb on + strand, within SGL_RS00775at 30.991 kb on + strand, within SGL_RS00775at 31.064 kb on + strandat 31.298 kb on + strand, within SGL_RS00780at 31.298 kb on + strand, within SGL_RS00780at 31.378 kb on - strandat 31.378 kb on - strandat 31.427 kb on - strandat 31.453 kb on - strand, within SGL_RS19375at 31.512 kb on - strand, within SGL_RS19375at 31.536 kb on - strand, within SGL_RS19375at 31.669 kb on + strand, within SGL_RS19380at 31.754 kb on + strand, within SGL_RS19380at 31.913 kb on - strand, within SGL_RS00785at 31.920 kb on + strand, within SGL_RS00785at 32.008 kb on + strand, within SGL_RS00785at 32.039 kb on - strand, within SGL_RS00785

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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30,842 - SGL_RS00775 0.42 +0.5
30,979 + SGL_RS00775 0.82 -0.9
30,991 + SGL_RS00775 0.85 +0.3
31,064 + -0.2
31,298 + SGL_RS00780 0.78 -0.4
31,298 + SGL_RS00780 0.78 -0.2
31,378 - +0.0
31,378 - -1.5
31,427 - +0.6
31,453 - SGL_RS19375 0.18 -0.0
31,512 - SGL_RS19375 0.52 +0.4
31,536 - SGL_RS19375 0.66 +0.6
31,669 + SGL_RS19380 0.19 -0.5
31,754 + SGL_RS19380 0.75 +0.1
31,913 - SGL_RS00785 0.33 +0.0
31,920 + SGL_RS00785 0.36 -0.2
32,008 + SGL_RS00785 0.67 -0.1
32,039 - SGL_RS00785 0.79 +0.8

Or see this region's nucleotide sequence