Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18985

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12805 and SGL_RS12810 are separated by 27 nucleotidesSGL_RS12810 and SGL_RS18985 are separated by 227 nucleotidesSGL_RS18985 and SGL_RS12815 are separated by 63 nucleotidesSGL_RS12815 and SGL_RS12820 are separated by 42 nucleotides SGL_RS12805: SGL_RS12805 - DNA repair protein RecO, at 2,329,304 to 2,330,119 _RS12805 SGL_RS12810: SGL_RS12810 - hypothetical protein, at 2,330,147 to 2,330,359 _RS12810 SGL_RS18985: SGL_RS18985 - transposase, at 2,330,587 to 2,330,724 _RS18985 SGL_RS12815: SGL_RS12815 - cytochrome b/b6 domain-containing protein, at 2,330,788 to 2,331,462 _RS12815 SGL_RS12820: SGL_RS12820 - 1,4-alpha-glucan branching enzyme, at 2,331,505 to 2,333,817 _RS12820 Position (kb) 2330 2331Strain fitness (log2 ratio) -1 0 1at 2330.423 kb on - strandat 2330.694 kb on + strand, within SGL_RS18985at 2330.716 kb on - strandat 2330.957 kb on - strand, within SGL_RS12815at 2331.016 kb on + strand, within SGL_RS12815at 2331.024 kb on - strand, within SGL_RS12815at 2331.024 kb on - strand, within SGL_RS12815at 2331.063 kb on - strand, within SGL_RS12815at 2331.115 kb on - strand, within SGL_RS12815at 2331.175 kb on - strand, within SGL_RS12815at 2331.178 kb on + strand, within SGL_RS12815at 2331.225 kb on + strand, within SGL_RS12815at 2331.243 kb on - strand, within SGL_RS12815at 2331.243 kb on - strand, within SGL_RS12815at 2331.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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2,330,423 - -0.6
2,330,694 + SGL_RS18985 0.78 +0.7
2,330,716 - -0.2
2,330,957 - SGL_RS12815 0.25 +0.5
2,331,016 + SGL_RS12815 0.34 +0.2
2,331,024 - SGL_RS12815 0.35 -0.5
2,331,024 - SGL_RS12815 0.35 +0.1
2,331,063 - SGL_RS12815 0.41 -0.1
2,331,115 - SGL_RS12815 0.48 +0.5
2,331,175 - SGL_RS12815 0.57 +0.1
2,331,178 + SGL_RS12815 0.58 +0.0
2,331,225 + SGL_RS12815 0.65 +0.3
2,331,243 - SGL_RS12815 0.67 +0.0
2,331,243 - SGL_RS12815 0.67 -0.2
2,331,404 + +0.0

Or see this region's nucleotide sequence