Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18490

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00305 and SGL_RS19300 are separated by 329 nucleotidesSGL_RS19300 and SGL_RS18490 overlap by 53 nucleotidesSGL_RS18490 and SGL_RS00315 overlap by 74 nucleotides SGL_RS00305: SGL_RS00305 - ATP-binding protein, at 68,050 to 68,574 _RS00305 SGL_RS19300: SGL_RS19300 - hypothetical protein, at 68,904 to 69,296 _RS19300 SGL_RS18490: SGL_RS18490 - hypothetical protein, at 69,244 to 69,408 _RS18490 SGL_RS00315: SGL_RS00315 - hypothetical protein, at 69,335 to 70,810 _RS00315 Position (kb) 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 68.309 kb on + strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.427 kb on - strand, within SGL_RS00305at 68.548 kb on + strandat 68.564 kb on + strandat 68.564 kb on + strandat 68.582 kb on + strandat 68.582 kb on + strandat 68.590 kb on - strandat 68.590 kb on - strandat 68.590 kb on - strandat 68.660 kb on - strandat 68.694 kb on - strandat 68.882 kb on - strandat 68.888 kb on - strandat 68.967 kb on + strand, within SGL_RS19300at 69.318 kb on + strand, within SGL_RS18490at 69.479 kb on + strandat 69.479 kb on + strandat 69.497 kb on - strand, within SGL_RS00315at 69.508 kb on + strand, within SGL_RS00315at 69.637 kb on + strand, within SGL_RS00315

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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68,309 + SGL_RS00305 0.49 +0.1
68,317 - SGL_RS00305 0.51 +0.0
68,317 - SGL_RS00305 0.51 +0.1
68,317 - SGL_RS00305 0.51 +0.3
68,317 - SGL_RS00305 0.51 +0.3
68,427 - SGL_RS00305 0.72 -0.4
68,548 + +0.0
68,564 + +0.3
68,564 + -0.3
68,582 + -0.3
68,582 + +0.4
68,590 - -0.2
68,590 - +0.1
68,590 - +0.5
68,660 - -0.3
68,694 - +0.0
68,882 - +0.8
68,888 - -0.2
68,967 + SGL_RS19300 0.16 +0.1
69,318 + SGL_RS18490 0.45 +0.3
69,479 + +1.8
69,479 + +0.3
69,497 - SGL_RS00315 0.11 +0.3
69,508 + SGL_RS00315 0.12 +1.1
69,637 + SGL_RS00315 0.20 -1.9

Or see this region's nucleotide sequence