Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18025

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18020 and SGL_RS18025 are separated by 125 nucleotidesSGL_RS18025 and SGL_RS18030 are separated by 75 nucleotidesSGL_RS18030 and SGL_RS18035 are separated by 204 nucleotides SGL_RS18020: SGL_RS18020 - phosphoketolase family protein, at 3,500,761 to 3,503,178 _RS18020 SGL_RS18025: SGL_RS18025 - hypothetical protein, at 3,503,304 to 3,503,561 _RS18025 SGL_RS18030: SGL_RS18030 - SRPBCC family protein, at 3,503,637 to 3,504,092 _RS18030 SGL_RS18035: SGL_RS18035 - efflux RND transporter permease subunit, at 3,504,297 to 3,506,969 _RS18035 Position (kb) 3503 3504Strain fitness (log2 ratio) -1 0 1 2 3at 3502.409 kb on + strand, within SGL_RS18020at 3502.576 kb on + strand, within SGL_RS18020at 3502.603 kb on + strand, within SGL_RS18020at 3502.611 kb on - strand, within SGL_RS18020at 3502.621 kb on - strand, within SGL_RS18020at 3502.713 kb on - strand, within SGL_RS18020at 3502.726 kb on + strand, within SGL_RS18020at 3502.814 kb on + strand, within SGL_RS18020at 3502.814 kb on + strand, within SGL_RS18020at 3502.822 kb on - strand, within SGL_RS18020at 3502.968 kb on - strandat 3503.096 kb on - strandat 3503.172 kb on + strandat 3503.180 kb on - strandat 3503.250 kb on - strandat 3503.399 kb on - strand, within SGL_RS18025at 3503.430 kb on - strand, within SGL_RS18025at 3503.500 kb on - strand, within SGL_RS18025at 3503.549 kb on + strandat 3503.556 kb on - strandat 3503.689 kb on - strand, within SGL_RS18030at 3503.716 kb on + strand, within SGL_RS18030at 3503.756 kb on - strand, within SGL_RS18030at 3503.840 kb on - strand, within SGL_RS18030at 3503.851 kb on + strand, within SGL_RS18030at 3503.867 kb on + strand, within SGL_RS18030at 3503.911 kb on + strand, within SGL_RS18030at 3503.919 kb on - strand, within SGL_RS18030at 3504.004 kb on + strand, within SGL_RS18030at 3504.004 kb on + strand, within SGL_RS18030at 3504.162 kb on + strandat 3504.172 kb on + strandat 3504.215 kb on + strandat 3504.216 kb on - strandat 3504.221 kb on - strandat 3504.223 kb on - strandat 3504.223 kb on - strandat 3504.462 kb on - strandat 3504.464 kb on + strandat 3504.467 kb on - strandat 3504.472 kb on - strandat 3504.488 kb on + strandat 3504.504 kb on + strandat 3504.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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3,502,409 + SGL_RS18020 0.68 +0.2
3,502,576 + SGL_RS18020 0.75 +2.2
3,502,603 + SGL_RS18020 0.76 -0.0
3,502,611 - SGL_RS18020 0.77 -0.1
3,502,621 - SGL_RS18020 0.77 -0.1
3,502,713 - SGL_RS18020 0.81 +0.3
3,502,726 + SGL_RS18020 0.81 +0.4
3,502,814 + SGL_RS18020 0.85 +0.3
3,502,814 + SGL_RS18020 0.85 -0.4
3,502,822 - SGL_RS18020 0.85 -0.0
3,502,968 - -0.0
3,503,096 - +0.0
3,503,172 + -0.2
3,503,180 - +0.2
3,503,250 - +0.3
3,503,399 - SGL_RS18025 0.37 +0.1
3,503,430 - SGL_RS18025 0.49 +3.2
3,503,500 - SGL_RS18025 0.76 +0.4
3,503,549 + +0.1
3,503,556 - -0.3
3,503,689 - SGL_RS18030 0.11 -0.4
3,503,716 + SGL_RS18030 0.17 -0.3
3,503,756 - SGL_RS18030 0.26 -0.6
3,503,840 - SGL_RS18030 0.45 -0.1
3,503,851 + SGL_RS18030 0.47 -0.3
3,503,867 + SGL_RS18030 0.50 -0.5
3,503,911 + SGL_RS18030 0.60 -0.7
3,503,919 - SGL_RS18030 0.62 +0.4
3,504,004 + SGL_RS18030 0.80 -0.5
3,504,004 + SGL_RS18030 0.80 -0.2
3,504,162 + -0.4
3,504,172 + -0.0
3,504,215 + -0.0
3,504,216 - +0.6
3,504,221 - -0.1
3,504,223 - -0.1
3,504,223 - +0.2
3,504,462 - -0.1
3,504,464 + -1.1
3,504,467 - -1.0
3,504,472 - -0.4
3,504,488 + -0.2
3,504,504 + -0.0
3,504,560 + +0.2

Or see this region's nucleotide sequence